Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_A21
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078785-7|AAC27086.2|  295|Caenorhabditis elegans Serpentine re...    31   0.80 
AF002198-6|AAF99938.1|  295|Caenorhabditis elegans Serpentine re...    31   1.4  
AF016444-12|AAB65927.2|  295|Caenorhabditis elegans Serpentine r...    30   1.8  
U29244-18|AAC71099.2|  515|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>AF078785-7|AAC27086.2|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 2 protein.
          Length = 295

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -3

Query: 450 LWYFCXLRISLIHRGCGVAYSRNSGVMYNDVGHWLVQRSXVF*RNSA 310
           L+ FC L IS I R CGV         +N   +W   RS +F  N A
Sbjct: 149 LYLFCTLNISAIPRDCGVLRCSLDNCYFN---YWTTDRSVLFALNFA 192


>AF002198-6|AAF99938.1|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 1 protein.
          Length = 295

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 450 LWYFCXLRISLIHRGCGVAYSRNSGVMYNDVGHWLVQRSXVF*RNSA 310
           ++ FC L IS I R CGV         +N   +W   RS +F  N A
Sbjct: 149 IYLFCTLNISAIPRDCGVLRCSLDNCYFN---YWTTDRSVLFALNFA 192


>AF016444-12|AAB65927.2|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 6 protein.
          Length = 295

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/47 (42%), Positives = 22/47 (46%)
 Frame = -3

Query: 450 LWYFCXLRISLIHRGCGVAYSRNSGVMYNDVGHWLVQRSXVF*RNSA 310
           L  FC L IS I R CGV         + D+  W V RS VF  N A
Sbjct: 149 LHLFCTLHISAIPRNCGVLRCAVDACFF-DI--WTVNRSVVFALNFA 192


>U29244-18|AAC71099.2|  515|Caenorhabditis elegans Hypothetical
           protein ZK1248.1 protein.
          Length = 515

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 187 VIMFLSFCIFIVFCAYTSSHPRLIEKDHLS--VDFPV 291
           ++ F  F +FI+FC   +S P+ I ++H+    DF V
Sbjct: 4   LLPFFIFSVFILFCTSKASLPKNIIQEHIKKHADFSV 40


>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
           protein C09F9.2 protein.
          Length = 1642

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +1

Query: 271 LSVDFPVCSRDCWGAVPSKDTRPLNKPVPYVIIHHTAIPTVC 396
           LS D PVC R C G   +  +   + P  Y   +    P  C
Sbjct: 732 LSSDKPVCIRSCTGGKKATTSSASSAPASYTCTNEYRFPEGC 773


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,836,841
Number of Sequences: 27780
Number of extensions: 324616
Number of successful extensions: 795
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)