Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_A14
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   227   2e-60
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   226   3e-60
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   219   3e-58
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    29   1.1  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    28   1.5  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   7.9  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  227 bits (554), Expect = 2e-60
 Identities = 103/160 (64%), Positives = 123/160 (76%)
 Frame = +3

Query: 90  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 269
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 270 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXPAAL 449
           NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD       PAAL
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 450 RVFCLKPGRNYCHVGXLSHEIGWKYRDVVRKLEDXRKGKA 569
           RV  LKPGR YC VG LS E+GWKY D+V KLE+ RK K+
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKS 165


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  226 bits (553), Expect = 3e-60
 Identities = 103/160 (64%), Positives = 123/160 (76%)
 Frame = +3

Query: 90  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 269
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 270 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXPAAL 449
           NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD       PAAL
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 450 RVFCLKPGRNYCHVGXLSHEIGWKYRDVVRKLEDXRKGKA 569
           RV  LKPGR YC VG LS E+GWKY D+V KLE+ RK K+
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKS 165


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  219 bits (536), Expect = 3e-58
 Identities = 97/160 (60%), Positives = 122/160 (76%)
 Frame = +3

Query: 90  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 269
           K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 270 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXPAAL 449
           NP+RG FHFRAPS+I  K VRGM+PHKT RG  AL+ L+  +G PPPFD       PAAL
Sbjct: 66  NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125

Query: 450 RVFCLKPGRNYCHVGXLSHEIGWKYRDVVRKLEDXRKGKA 569
           RV  LKP R YC +G LS E+GWKY+++V KLE+ RK K+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 117 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 221
           H L  + AV  K++  G K VV+RC+ I  + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 558 KGKAVXRVAYEKTLXRITXDAGEXVSKATTP 650
           KGK V R+ Y+     +  D+GE ++K   P
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVDGP 570


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 403 GHPSYVRSLLRAFLPRSVLCGIMP 332
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,687
Number of Sequences: 5004
Number of extensions: 55502
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)