Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_A14
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 210 8e-55
07_01_0071 - 522920-523063,524125-524212,524289-524677 210 1e-54
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 120 1e-27
11_04_0056 + 12942802-12942920,12943022-12943115 68 1e-11
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 38 0.010
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 31 0.89
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 8.3
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 210 bits (514), Expect = 8e-55
Identities = 94/166 (56%), Positives = 123/166 (74%)
Frame = +3
Query: 96 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 275
+V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K + FLRKR N P
Sbjct: 12 VVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 71
Query: 276 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXPAALRV 455
+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D P AL+V
Sbjct: 72 SHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 131
Query: 456 FCLKPGRNYCHVGXLSHEIGWKYRDVVRKLEDXRKGKAVXRVAYEK 593
L+PG YC +G LS E+GW Y D +R+LE+ RK KA +VAY++
Sbjct: 132 LRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA--KVAYDR 175
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 210 bits (512), Expect = 1e-54
Identities = 94/171 (54%), Positives = 122/171 (71%)
Frame = +3
Query: 81 LXNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKR 260
L + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K + FLRKR
Sbjct: 7 LCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKR 66
Query: 261 CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXP 440
N P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +DG PPP+D P
Sbjct: 67 MNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVP 126
Query: 441 AALRVFCLKPGRNYCHVGXLSHEIGWKYRDVVRKLEDXRKGKAVXRVAYEK 593
AL+V L+PG YC +G LS E+GW Y D +R+LE+ RK KA +VAYE+
Sbjct: 127 DALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KVAYER 175
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 120 bits (289), Expect = 1e-27
Identities = 50/92 (54%), Positives = 64/92 (69%)
Frame = +3
Query: 264 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXPA 443
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D P
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 444 ALRVFCLKPGRNYCHVGXLSHEIGWKYRDVVR 539
AL+V L+PG YC +G LS E+GW Y D +R
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 67.7 bits (158), Expect = 1e-11
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = +3
Query: 357 RGKNALRRLRTYDGCPPPFDNXXXXXXPAALRVFCLKPGRNYCHVGXLSHEIGWKY 524
RG+ AL RL+ Y+G PPP+D P AL+V L+PG YC +G LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 37.9 bits (84), Expect = 0.010
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Frame = +3
Query: 99 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKLM 242
V+D +LGRLA+ IA + N+ VVVV E++ +SG KL
Sbjct: 541 VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 600
Query: 243 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 416
R R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 601 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 31.5 bits (68), Expect = 0.89
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +1
Query: 139 QSSPRSFSKGTKLLWFAANKSISLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFY 318
Q+SP + +L WF N ++S LG C + T +DLS L + Y
Sbjct: 567 QNSPTDNTSSERLQWFRENSTVS---ELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLY 623
Query: 319 GRL*E 333
GRL E
Sbjct: 624 GRLSE 628
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 264 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 410
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,085,012
Number of Sequences: 37544
Number of extensions: 411605
Number of successful extensions: 859
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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