Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_A14
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   4.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   4.8  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   6.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   8.3  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 850 GXGXPGXRGGPR 815
           G G PG  GGPR
Sbjct: 143 GDGSPGGNGGPR 154


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 850 GXGXPGXRGGPR 815
           G G PG  GGPR
Sbjct: 143 GDGSPGGNGGPR 154


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 223 LKKLPEILICSQRTTTTLFPSRRTL 149
           LK L + L+C ++ +TT+ P+ + +
Sbjct: 68  LKLLSDGLMCVEKVSTTIVPTTQEI 92


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 631 TFSPASXVILLSVFS 587
           TF+P++ V++LS FS
Sbjct: 206 TFAPSTLVVMLSWFS 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,995
Number of Sequences: 438
Number of extensions: 4361
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)