Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_A11
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    30   0.50 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   3.5  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   4.6  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    26   6.1  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 344 PRSSLKNSPVVTTFTKKSLVALSQSPEDLPSPHFPVPSDK 225
           P+S   +SP   + T+KS V      +++ S HF VP  K
Sbjct: 442 PKSQFSSSPTKESTTRKSEVEPPSPSKEIKSSHFSVPEFK 481


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -2

Query: 350 SLPRSSLKNSPVVTTFTKKSLVALSQSPEDLPSPHFPVPSDKVVNIARVSD*P*KLAGDR 171
           SLP S +  +  +   +     +LS  P  +PS    +P+D +  ++  S  P K   +R
Sbjct: 248 SLPISDVTRALPLAPASNSQHPSLSSQPVSVPSNTINIPTDSLSIVSNPSQTPAKFDSNR 307

Query: 170 I 168
           I
Sbjct: 308 I 308


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +2

Query: 89  FQGVVIRCTPCMRERSSFYASWLRREVSDHQPIFKVSPTPSRYSRLC 229
           F G     T  M +   F + W     SD    F +SP    ++RLC
Sbjct: 127 FVGSTSSLTGLMSQLHFFISKWKFPNFSDLSKGFYISPNERNFTRLC 173


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 329 KNSPVVTTFTKKSLVALSQSPEDLPSPHF 243
           KN PVV  FT+ +L  +   PED+    F
Sbjct: 53  KNQPVVGFFTEDALKMVGTKPEDVMQVSF 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,832
Number of Sequences: 5004
Number of extensions: 57473
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)