Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_A10
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.53 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.6  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
 Frame = +2

Query: 677 PRLEPXAPXXLPRXLPPXGXPP--SXPPPVXPXXXXXXXXXXXXXXQXIPXPKXPAWXSP 850
           P   P  P       PP   PP  S PPP  P                +P P  PA    
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPP-SPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182

Query: 851 APXQTPHXPASKNP 892
           +P   P  P++  P
Sbjct: 183 SPPSAPSLPSAVPP 196



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 19/63 (30%), Positives = 22/63 (34%)
 Frame = +2

Query: 737 PPSXPPPVXPXXXXXXXXXXXXXXQXIPXPKXPAWXSPAPXQTPHXPASKNPXHXGXHPN 916
           PPS P P  P                IP P  PA   P P + P  P+S  P      P 
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPS-IPPPS-PASAPPIPSKAPPIPSSLPPPAQPAAPV 181

Query: 917 XAP 925
            +P
Sbjct: 182 KSP 184


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +2

Query: 668  APXPRLEPXAPXXLPRXLPPXGXPPSXPPPVXP 766
            AP P   P +    P   P    PPS PPP  P
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 689  PXAPXXLPRXLPPXGXPPSXPPPVXP 766
            P  P  LP+  PP   P S  PP  P
Sbjct: 1884 PPPPMALPKAGPPSAAPTSALPPAGP 1909


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 695 APXXLPRXLPPXGXPPSXPPP 757
           AP  +P   P  G PP  PPP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPP 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,063
Number of Sequences: 5004
Number of extensions: 31279
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)