Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_A08
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   285   6e-78
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.6  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   3.5  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    26   8.0  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   8.0  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  285 bits (699), Expect = 6e-78
 Identities = 133/195 (68%), Positives = 157/195 (80%), Gaps = 1/195 (0%)
 Frame = +2

Query: 209 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 388
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 389 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 565
           L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L  FP GKP
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125

Query: 566 LNMILDDGGDLTNLVHTKYPDLLKDVKGIXEEXTTGVHTLYXMFRERLXXXPAINVNXSV 745
           LNMILDDGGDLT LVH ++P+LL D++GI EE TTGVH LY MF+E     PAINVN SV
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDSV 185

Query: 746 TKSQFXXLYXCXEXL 790
           TKS+F  L+ C E L
Sbjct: 186 TKSKFDNLFGCKESL 200


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 645 FTSFKRSGYLVWTKLVKSPPSSKIILRGF 559
           +  F++ G L + KLVK P + + + RGF
Sbjct: 294 YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -1

Query: 340 YSGTFEYFSWSIFPTTCHKAWHFFLC*HNFFSAPFSQFLVSDFVRRLHFVVQSLIY 173
           Y   +  ++W  F  T +K  H+FL  H +   P + F+         F V S+++
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVY--VPLNSFMSKSLSTFFTFFVSSVLH 409


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 612 WTKLVKSPPSSKI 574
           WTKL+ SPP S I
Sbjct: 476 WTKLISSPPKSSI 488


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +1

Query: 250 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 429
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 430 H 432
           H
Sbjct: 150 H 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,814
Number of Sequences: 5004
Number of extensions: 64184
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)