Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_A05
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.9  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    27   4.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +3

Query: 783  PXXPXXXXPPXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXPPPP 914
            P  P    PP      P         PP  PP        PPPP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/49 (30%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
 Frame = +3

Query: 777 PXPXXPXXXXP---PXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXPPPP 914
           P P  P    P   P      P         PPP PP        PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +2

Query: 791 PPXPXPXXXPXXPPPXXXXXXXXXPPXXPP 880
           PP P     P  PPP         PP  PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +2

Query: 791  PPXPXPXXXPXXPPPXXXXXXXXXPPXXPPXXXXXXXXPP 910
            PP P P   P  P P         P   PP        PP
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +2

Query: 791  PPXPXPXXXPXXPPPXXXXXXXXXPPXXPPXXXXXXXXPP 910
            PP P P   P  P P         P   PP        PP
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +2

Query: 791  PPXPXPXXXPXXPPPXXXXXXXXXPPXXPPXXXXXXXXPP 910
            PP P P   P  P P         P   PP        PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 326 FRTLGPVARTTXGTSPWPHVVNEIXDFGILTV 231
           F TL P  R       WPHV   +  FGI  V
Sbjct: 54  FATLFPKYREKYLREVWPHVTRALDKFGITCV 85


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 861 PPPXPPXXXXXXXXPPPP 914
           PPP PP        PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPP 27



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 861 PPPXPPXXXXXXXXPPPP 914
           PPP PP        PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,363
Number of Sequences: 5004
Number of extensions: 32540
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)