Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_A05
(914 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 37 0.017
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 34 0.12
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 34 0.16
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 34 0.16
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 34 0.16
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 33 0.22
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 33 0.22
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 33 0.38
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.0
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 30 2.7
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 3.5
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 4.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 8.1
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 28 8.1
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 28 8.1
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 8.1
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 37.1 bits (82), Expect = 0.017
Identities = 29/125 (23%), Positives = 29/125 (23%), Gaps = 2/125 (1%)
Frame = +3
Query: 546 PPPXXXXXXPXXXXXXXXXPXXXXXPPPXXPXXXXXXPXXXXXPXXXPXXXXPPPXPXXX 725
PPP P P PPP P P P P P P P
Sbjct: 26 PPPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLA 85
Query: 726 XXXXXXXXXXXXXXXXXPXPXXPXXXXP--PXXXXXXPXXXXXXXXXPPPXPPXXXXXXX 899
P P P P P PPP PP
Sbjct: 86 SYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPP----PHY 141
Query: 900 XPPPP 914
PPPP
Sbjct: 142 PPPPP 146
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/98 (25%), Positives = 25/98 (25%)
Frame = -3
Query: 912 GGGXXXXXXXXGGXXGGXXXXXXXXXGGGXXGXXXGXGXGGXXXXXXXXXXXGXXXGXXX 733
GGG G GG GGG G G G GG G G
Sbjct: 30 GGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGG 89
Query: 732 XXXXXXGXGXXXXXXGXXXGXXXXXXXXXXXXGGXGGG 619
G G G G GG GGG
Sbjct: 90 CGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGG 127
Score = 32.3 bits (70), Expect = 0.50
Identities = 25/104 (24%), Positives = 25/104 (24%)
Frame = -2
Query: 913 GGGGXXXXXXXXGGXGGGXXXXXXXXXGXXXXXXGGXXXXGXXGXGXXXXXXXXXXXXXX 734
GGGG GG GGG G GG G G G
Sbjct: 92 GGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGS 151
Query: 733 XXXXXXGXGGGXXXXGXXXGXXXXXGXXXXXXGXXGGGXXXXXG 602
G GGG G G GGG G
Sbjct: 152 SGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGG 195
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/104 (25%), Positives = 26/104 (25%)
Frame = -2
Query: 913 GGGGXXXXXXXXGGXGGGXXXXXXXXXGXXXXXXGGXXXXGXXGXGXXXXXXXXXXXXXX 734
GGGG GG GGG GG G G G
Sbjct: 28 GGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGG--GGGCAPPPAPCGGGCGG 85
Query: 733 XXXXXXGXGGGXXXXGXXXGXXXXXGXXXXXXGXXGGGXXXXXG 602
G GGG G G G G GGG G
Sbjct: 86 GGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGG 129
Score = 29.9 bits (64), Expect = 2.7
Identities = 28/121 (23%), Positives = 28/121 (23%)
Frame = -2
Query: 910 GGGXXXXXXXXGGXGGGXXXXXXXXXGXXXXXXGGXXXXGXXGXGXXXXXXXXXXXXXXX 731
GGG GG GG G GG G G G
Sbjct: 56 GGGCGGGGGGCGGGGG--CAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGG 113
Query: 730 XXXXXGXGGGXXXXGXXXGXXXXXGXXXXXXGXXGGGXXXXXGXXXXXXXXXGXXXXXXG 551
G GGG G G G G GGG G G G
Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGG 173
Query: 550 G 548
G
Sbjct: 174 G 174
Score = 28.7 bits (61), Expect = 6.1
Identities = 23/98 (23%), Positives = 23/98 (23%)
Frame = -3
Query: 912 GGGXXXXXXXXGGXXGGXXXXXXXXXGGGXXGXXXGXGXGGXXXXXXXXXXXGXXXGXXX 733
GGG GG GG GGG G G GG G G
Sbjct: 93 GGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSS 152
Query: 732 XXXXXXGXGXXXXXXGXXXGXXXXXXXXXXXXGGXGGG 619
G G G G GGG
Sbjct: 153 GGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGG 190
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/98 (25%), Positives = 25/98 (25%)
Frame = -3
Query: 912 GGGXXXXXXXXGGXXGGXXXXXXXXXGGGXXGXXXGXGXGGXXXXXXXXXXXGXXXGXXX 733
GGG G GG GGG G G G GG G G
Sbjct: 30 GGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGG 89
Query: 732 XXXXXXGXGXXXXXXGXXXGXXXXXXXXXXXXGGXGGG 619
G G G G GG GGG
Sbjct: 90 CGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGG 127
Score = 32.3 bits (70), Expect = 0.50
Identities = 25/104 (24%), Positives = 25/104 (24%)
Frame = -2
Query: 913 GGGGXXXXXXXXGGXGGGXXXXXXXXXGXXXXXXGGXXXXGXXGXGXXXXXXXXXXXXXX 734
GGGG GG GGG G GG G G G
Sbjct: 92 GGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGS 151
Query: 733 XXXXXXGXGGGXXXXGXXXGXXXXXGXXXXXXGXXGGGXXXXXG 602
G GGG G G GGG G
Sbjct: 152 SGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGG 195
Score = 30.3 bits (65), Expect = 2.0
Identities = 26/104 (25%), Positives = 26/104 (25%)
Frame = -2
Query: 913 GGGGXXXXXXXXGGXGGGXXXXXXXXXGXXXXXXGGXXXXGXXGXGXXXXXXXXXXXXXX 734
GGGG GG GGG GG G G G
Sbjct: 28 GGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGG--GGGCAPPPAPCGGGCGG 85
Query: 733 XXXXXXGXGGGXXXXGXXXGXXXXXGXXXXXXGXXGGGXXXXXG 602
G GGG G G G G GGG G
Sbjct: 86 GGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGG 129
Score = 29.9 bits (64), Expect = 2.7
Identities = 28/121 (23%), Positives = 28/121 (23%)
Frame = -2
Query: 910 GGGXXXXXXXXGGXGGGXXXXXXXXXGXXXXXXGGXXXXGXXGXGXXXXXXXXXXXXXXX 731
GGG GG GG G GG G G G
Sbjct: 56 GGGCGGGGGGCGGGGG--CAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGG 113
Query: 730 XXXXXGXGGGXXXXGXXXGXXXXXGXXXXXXGXXGGGXXXXXGXXXXXXXXXGXXXXXXG 551
G GGG G G G G GGG G G G
Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGG 173
Query: 550 G 548
G
Sbjct: 174 G 174
Score = 28.7 bits (61), Expect = 6.1
Identities = 23/98 (23%), Positives = 23/98 (23%)
Frame = -3
Query: 912 GGGXXXXXXXXGGXXGGXXXXXXXXXGGGXXGXXXGXGXGGXXXXXXXXXXXGXXXGXXX 733
GGG GG GG GGG G G GG G G
Sbjct: 93 GGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSS 152
Query: 732 XXXXXXGXGXXXXXXGXXXGXXXXXXXXXXXXGGXGGG 619
G G G G GGG
Sbjct: 153 GGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGG 190
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 777 PXPXXPXXXXPPXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXPPPP 914
P P P PP P PPP PP PPPP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 791 PPXPXPXXXPXXPPPXXXXXXXXXPPXXPP 880
PP P P P PPP PP PP
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 777 PXPXXPXXXXPPXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXPPPP 914
P P P P P PPP PP PPPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 777 PXPXXPXXXXPPXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXPPPP 914
P P P PP P PPP PP PPPP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 791 PPXPXPXXXPXXPPPXXXXXXXXXPPXXPP 880
PP P P P PPP PP PP
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 777 PXPXXPXXXXPPXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXPPPP 914
P P P P P PPP PP PPPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 777 PXPXXPXXXXPPXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXPPPP 914
P P P PP P PPP PP PPPP
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 791 PPXPXPXXXPXXPPPXXXXXXXXXPPXXPP 880
PP P P P PPP PP PP
Sbjct: 343 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 777 PXPXXPXXXXPPXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXPPPP 914
P P P P P PPP PP PPPP
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 33.5 bits (73), Expect = 0.22
Identities = 30/122 (24%), Positives = 30/122 (24%)
Frame = -2
Query: 910 GGGXXXXXXXXGGXGGGXXXXXXXXXGXXXXXXGGXXXXGXXGXGXXXXXXXXXXXXXXX 731
GGG GG GGG G GG G G G
Sbjct: 62 GGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGG- 120
Query: 730 XXXXXGXGGGXXXXGXXXGXXXXXGXXXXXXGXXGGGXXXXXGXXXXXXXXXGXXXXXXG 551
G GGG G G G G GGG G G G
Sbjct: 121 -----GCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGG 175
Query: 550 GG 545
GG
Sbjct: 176 GG 177
Score = 31.9 bits (69), Expect = 0.66
Identities = 25/104 (24%), Positives = 25/104 (24%)
Frame = -2
Query: 913 GGGGXXXXXXXXGGXGGGXXXXXXXXXGXXXXXXGGXXXXGXXGXGXXXXXXXXXXXXXX 734
GGGG GG GGG GG G G G
Sbjct: 28 GGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGGGCGG 87
Query: 733 XXXXXXGXGGGXXXXGXXXGXXXXXGXXXXXXGXXGGGXXXXXG 602
G GGG G G G GGG G
Sbjct: 88 GGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGG 131
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/98 (24%), Positives = 24/98 (24%)
Frame = -3
Query: 912 GGGXXXXXXXXGGXXGGXXXXXXXXXGGGXXGXXXGXGXGGXXXXXXXXXXXGXXXGXXX 733
GGG GG G GGG G G G G G G
Sbjct: 69 GGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGG 128
Query: 732 XXXXXXGXGXXXXXXGXXXGXXXXXXXXXXXXGGXGGG 619
G G G G GG GGG
Sbjct: 129 CGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGGGCGGG 166
Score = 29.9 bits (64), Expect = 2.7
Identities = 25/99 (25%), Positives = 25/99 (25%), Gaps = 1/99 (1%)
Frame = -2
Query: 913 GGGGXXXXXXXXGGXGGGXXXXXXXXX-GXXXXXXGGXXXXGXXGXGXXXXXXXXXXXXX 737
G GG GG GGG G GG G G G
Sbjct: 91 GCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCG 150
Query: 736 XXXXXXXGXGGGXXXXGXXXGXXXXXGXXXXXXGXXGGG 620
G GGG G G G G GGG
Sbjct: 151 GGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGGGGGCGGG 189
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 33.5 bits (73), Expect = 0.22
Identities = 26/99 (26%), Positives = 26/99 (26%), Gaps = 1/99 (1%)
Frame = -3
Query: 912 GGGXXXXXXXXGGXXGGXXXXXXXXXGGGXXG-XXXGXGXGGXXXXXXXXXXXGXXXGXX 736
GGG GG GG GGG G G G GG G G
Sbjct: 115 GGGGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGG 174
Query: 735 XXXXXXXGXGXXXXXXGXXXGXXXXXXXXXXXXGGXGGG 619
G G G G GG GGG
Sbjct: 175 YGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGG 213
Score = 29.1 bits (62), Expect = 4.6
Identities = 25/100 (25%), Positives = 25/100 (25%), Gaps = 2/100 (2%)
Frame = -2
Query: 913 GGGGXXXXXXXXGGXGGGXXXXXXXXXGXXXXXXGGXXXXGXXGXGXXXXXXXXXXXXXX 734
GGGG GG GGG G GG G G
Sbjct: 100 GGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGG 159
Query: 733 XXXXXXGXG--GGXXXXGXXXGXXXXXGXXXXXXGXXGGG 620
G G GG G G G G GGG
Sbjct: 160 GDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGG 199
Score = 28.3 bits (60), Expect = 8.1
Identities = 28/124 (22%), Positives = 28/124 (22%), Gaps = 1/124 (0%)
Frame = -2
Query: 913 GGGGXXXXXXXXGGXGGGXXXXXXXXXGXXXXXXGGXXXXGXXGXGXXXXXXXXXXXXXX 734
GG G GG G G G G G G G
Sbjct: 80 GGSGGGAFGGFNGGYGQGGYGGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGG 139
Query: 733 XXXXXXGXG-GGXXXXGXXXGXXXXXGXXXXXXGXXGGGXXXXXGXXXXXXXXXGXXXXX 557
G G GG G G G G GGG G G
Sbjct: 140 MGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGG 199
Query: 556 XGGG 545
GGG
Sbjct: 200 MGGG 203
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 32.7 bits (71), Expect = 0.38
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 277 GPTWSTKSXTSGFSQSGSAHLRANTEXXVHLSGIFSFGKCXP 152
G T +T + +SGFS S+ ANT + +G FSFG P
Sbjct: 13 GGTAATTTASSGFSFGNSSTSTANTGGNTNTTGGFSFGSAQP 54
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/123 (21%), Positives = 27/123 (21%)
Frame = +3
Query: 546 PPPXXXXXXPXXXXXXXXXPXXXXXPPPXXPXXXXXXPXXXXXPXXXPXXXXPPPXPXXX 725
P P P P PPP P P P P PPP
Sbjct: 272 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP-----PGRTPGPPGMPGMPPPPPPSRFG 326
Query: 726 XXXXXXXXXXXXXXXXXPXPXXPXXXXPPXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXP 905
P P PP P PP PP P
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPP--PPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 384
Query: 906 PPP 914
PPP
Sbjct: 385 PPP 387
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/97 (23%), Positives = 23/97 (23%)
Frame = +3
Query: 624 PPXXPXXXXXXPXXXXXPXXXPXXXXPPPXPXXXXXXXXXXXXXXXXXXXXPXPXXPXXX 803
PP P P P PPP P P P
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP---PGMPGMP 317
Query: 804 XPPXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXPPPP 914
PP P PPP PP PPPP
Sbjct: 318 PPPPPSRFGPPGMGGM---PPPPPPGMRYPGGMPPPP 351
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/123 (21%), Positives = 27/123 (21%)
Frame = +3
Query: 546 PPPXXXXXXPXXXXXXXXXPXXXXXPPPXXPXXXXXXPXXXXXPXXXPXXXXPPPXPXXX 725
P P P P PPP P P P P PPP
Sbjct: 282 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP-----PGRTPGPPGMPGMPPPPPPSRFG 336
Query: 726 XXXXXXXXXXXXXXXXXPXPXXPXXXXPPXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXP 905
P P PP P PP PP P
Sbjct: 337 PPGMGGMPPPPPPGMRYPGGMPPPP--PPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 394
Query: 906 PPP 914
PPP
Sbjct: 395 PPP 397
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/97 (23%), Positives = 23/97 (23%)
Frame = +3
Query: 624 PPXXPXXXXXXPXXXXXPXXXPXXXXPPPXPXXXXXXXXXXXXXXXXXXXXPXPXXPXXX 803
PP P P P PPP P P P
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP---PGMPGMP 327
Query: 804 XPPXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXPPPP 914
PP P PPP PP PPPP
Sbjct: 328 PPPPPSRFGPPGMGGM---PPPPPPGMRYPGGMPPPP 361
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = -3
Query: 912 GGGXXXXXXXXGGXXGGXXXXXXXXXGGGXXGXXXGXGXGG 790
GGG GG GG GGG G G G GG
Sbjct: 8 GGGGGFRGGRGGGGGGGFRGGRGGDRGGGFRGGRGGFGGGG 48
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/57 (26%), Positives = 15/57 (26%)
Frame = +3
Query: 546 PPPXXXXXXPXXXXXXXXXPXXXXXPPPXXPXXXXXXPXXXXXPXXXPXXXXPPPXP 716
P P P P PPP P P P P PPP P
Sbjct: 31 PTPMCQPRMPCAAPMPMPMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPP 87
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Frame = +2
Query: 794 PXPXPXXXP-XXPPPXXXXXXXXXPPXXPPXXXXXXXXPPP 913
P P P P PPP PP PP PPP
Sbjct: 44 PMPMPMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPP 84
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +2
Query: 794 PXPXPXXXPXXPPPXXXXXXXXXPPXXPPXXXXXXXXPPP 913
P P P P PP PP PP PPP
Sbjct: 40 PPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPP 79
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/48 (31%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Frame = +3
Query: 777 PXPXXPXXXXPPXXXXXXPXXXXXXXXXPP--PXPPXXXXXXXXPPPP 914
P P P PP P PP P PP PPPP
Sbjct: 31 PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPP 78
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 791 PPXPXPXXXPXXPPPXXXXXXXXXPPXXPPXXXXXXXXPPP 913
PP P P P PP PP PP PPP
Sbjct: 41 PPLPCPPP-PICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +2
Query: 791 PPXPXPXXXPXXPPPXXXXXXXXXPPXXPPXXXXXXXXPPP 913
PP P P PPP PP P PPP
Sbjct: 28 PPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPP 68
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 791 PPXPXPXXXPXXPPPXXXXXXXXXPPXXPPXXXXXXXXPPP 913
PP P P P PPP PP PP PP
Sbjct: 138 PPPPPPPRVPRTPPP--RSPPPRRPPMTPPSPQRRPPRTPP 176
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 28.3 bits (60), Expect = 8.1
Identities = 27/104 (25%), Positives = 27/104 (25%)
Frame = -2
Query: 913 GGGGXXXXXXXXGGXGGGXXXXXXXXXGXXXXXXGGXXXXGXXGXGXXXXXXXXXXXXXX 734
GGGG GG GGG G GG G G G
Sbjct: 52 GGGGGGGGGGGGGGFGGG---NGGFGGGGGGNYGGGGGNQGGGGGG----GFNFNDIGGL 104
Query: 733 XXXXXXGXGGGXXXXGXXXGXXXXXGXXXXXXGXXGGGXXXXXG 602
G GGG G G G G GGG G
Sbjct: 105 INSMGGGGGGGQRQGGGGGGFGDILGGIGSLIGGGGGGQYNGGG 148
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 807 PPXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXPPPP 914
PP P PPP PP PPPP
Sbjct: 67 PPPPPPPPPLISILQQAPPPPPPPPPPTLKAPPPPP 102
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 807 PPXXXXXXPXXXXXXXXXPPPXPPXXXXXXXXPPPP 914
PP P PPP PP PPPP
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPP 596
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,727,369
Number of Sequences: 27780
Number of extensions: 257021
Number of successful extensions: 1517
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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