Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_A03
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.96 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
 Frame = +1

Query: 754 TPPPSXXPPPXSPPFLXXSYPLXXXXPFQSXXPXSPXXXXXPLRPXPPPXPA--XRGXPR 927
           T  P    PP  PP    S P           P +P     P  P  PP PA      P 
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP--PLPPSAPIAPPLPAGMPAAPPL 469

Query: 928 XXXQPSPP 951
               P+PP
Sbjct: 470 PPAAPAPP 477



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 21/65 (32%), Positives = 25/65 (38%)
 Frame = +1

Query: 715 SSPLRLXPXXXFXTPPPSXXPPPXSPPFLXXSYPLXXXXPFQSXXPXSPXXXXXPLRPXP 894
           S P    P      PP      P +PP L  S P+    P  +  P +P     P  P P
Sbjct: 422 SLPPSAPPSLPPSAPPSLPMGAPAAPP-LPPSAPIAP--PLPAGMPAAPPLP--PAAPAP 476

Query: 895 PPXPA 909
           PP PA
Sbjct: 477 PPAPA 481


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 21/79 (26%), Positives = 24/79 (30%)
 Frame = +1

Query: 712 LSSPLRLXPXXXFXTPPPSXXPPPXSPPFLXXSYPLXXXXPFQSXXPXSPXXXXXPLRPX 891
           L SP    P     TP P+  P P   P +    P           P  P        P 
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP----------PPPPPGVAGAGPPPP 778

Query: 892 PPPXPAXRGXPRXXXQPSP 948
           PPP PA          P+P
Sbjct: 779 PPPPPAVSAGGSRYYAPAP 797



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/58 (29%), Positives = 19/58 (32%)
 Frame = +1

Query: 778 PPXSPPFLXXSYPLXXXXPFQSXXPXSPXXXXXPLRPXPPPXPAXRGXPRXXXQPSPP 951
           PP  PP +    P     P     P +P     P    PPP P   G       P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP---PPAPIMGGPP---PPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,950
Number of Sequences: 5004
Number of extensions: 19364
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)