Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_A02
         (941 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.71 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.99 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   5.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   9.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   9.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 614 TPPXPPPPPXXP 649
           TPP P PPP  P
Sbjct: 337 TPPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect(2) = 0.71
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 608 PXTPPXPPPPP 640
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.4 bits (43), Expect(2) = 0.71
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 620 PXPPPPPXXPXXP 658
           P PPPPP     P
Sbjct: 341 PAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.99
 Identities = 13/41 (31%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
 Frame = +2

Query: 563 PPXXPPXXAXXPXXXPXTPP-XPPPPPXXPXXPXXPPXXPP 682
           P    P     P   P  P    PP P     P  PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/37 (29%), Positives = 11/37 (29%)
 Frame = +2

Query: 575 PPXXAXXPXXXPXTPPXPPPPPXXPXXPXXPPXXPPP 685
           P   A  P   P   P  P     P     PP   PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 199 NARLLHYS*TYNSVFGRLER 140
           N   +HY+  Y+S++GR +R
Sbjct: 592 NQAAIHYNLPYSSLYGRFKR 611


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 617  PPXPPPPP 640
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 108 DRRLHQSCPTALRVSARQQQ 49
           DRRLH + P+ L   +R Q+
Sbjct: 117 DRRLHDNSPSFLSDHSRDQE 136


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 46  KLLLPRGDPQG 78
           +L+LPRG P+G
Sbjct: 605 RLILPRGKPEG 615


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 46  KLLLPRGDPQG 78
           +L+LPRG P+G
Sbjct: 605 RLILPRGKPEG 615


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,741
Number of Sequences: 438
Number of extensions: 5764
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)