Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_A01
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...    41   0.001
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 28/86 (32%), Positives = 36/86 (41%)
 Frame = +3

Query: 135 ERTFIMVXPDGVQRGLXGHHY*TFXKXRLQTSRFEIRMAIRRTSXXTLXRFXIPXLSCXX 314
           ERTFI + PDGV RGL G     F +   +    + +M   +       +          
Sbjct: 5   ERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALK-QMTASKAHLEVHYQDLKDKPFFPS 63

Query: 315 LXKYMXSXPVXXMXWXGXXVVNTGAS 392
           L +YM S PV  M W G  VV  G S
Sbjct: 64  LIEYMSSGPVVAMVWQGLDVVKQGRS 89


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = -3

Query: 761 GRXGGGGXXGGXXXXXXXXXXXXXGWEXXXXGGRXGVVXGGGXG 630
           GR GGG   GG              W     GG  G   GGG G
Sbjct: 56  GRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGG 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,892,380
Number of Sequences: 27780
Number of extensions: 83112
Number of successful extensions: 442
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)