Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_P22
         (1034 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.087
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.087
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +2

Query: 614 PXPXGGGXPPPPPXXXGXXGXPGPPAP 694
           P P  GG PPPPP        P PP P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -3

Query: 390 PPXPXXPXXXPXGGGXXGGGGRXPXPPGXXXXXPPPXP 277
           P     P   P      GG    P PPG     PPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 308 PGGXGXRPPPPXXPPP 355
           PG  G  PPPP  PPP
Sbjct: 768 PGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 904  PPPPXXXGXPARXPPPXXPAXAXXGXXAAXPPXXGXGA 1017
            PPP    G P   PPP  P  A  G     PP     A
Sbjct: 752  PPPAPIMGGP--PPPPPPPGVAGAGPPPPPPPPPAVSA 787



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 904 PPPPXXXGXPARXPPPXXPAXAXXG 978
           PPPP   G     PPP  PA +  G
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = +2

Query: 239 PXPXXXXXVRAXPGXGGGXXXXXPGGXGXRPPPPXXPPPXGXXXG 373
           P P         P  GG      P G     PPP  PPP     G
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3

Query: 696 PGAGGPGXPXXPXXXGGGGGXPPP 625
           P  GGP  P  P    G G  PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
 Frame = +1

Query: 904  PPPPXXXGXPARXPPPXXPAXAXXGXXAAXPPXXG-XGARP 1023
            PPP      PA  P P  P     G     PP  G  GA P
Sbjct: 735  PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775



 Score = 25.8 bits (54), Expect = 10.0
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
 Frame = -1

Query: 290 PPPXPAX----PXPPPPXXXXXXPXGPP 219
           PPP P      P PPPP      P  PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 10.0
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 293 PPPPXPAXPXPPPPXXXXXXPXGPP 219
           PP P    P PPPP         PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 25.8 bits (54), Expect = 10.0
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 4/18 (22%)
 Frame = -1

Query: 293 PPPPXP----AXPXPPPP 252
           PPPP P    A P PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 620 PXGGGXPPPPPXXXGXXGXPGPPAP 694
           P G   PPPPP        P PP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 620 PXGGGXPPPPPXXXGXXGXPGPPAPGXXXPR 712
           P     PPPPP        P PP PG    R
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 904 PPPPXXXGXPARXPPPXXP 960
           PPPP     P++ PPP  P
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -1

Query: 293  PPPPXPAXPXPPPPXXXXXXPXGPP 219
            P PP P    PPPP      P GPP
Sbjct: 1705 PTPPPPPMSVPPPP-SAPPMPAGPP 1728



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 293  PPPPXPAXPXPPPPXXXXXXPXGPP 219
            PPPP    P P  P      P  PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
 Frame = +2

Query: 614  PXPXGGGXPPP---PPXXXGXXGXPGPPAPGXXXP 709
            P P     PPP   PP   G    P PP P    P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 25.8 bits (54), Expect = 10.0
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 290  PPPXPAXPXPPPPXXXXXXPXGPP 219
            PP   A   PPPP      P  PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP 1722


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
 Frame = +1

Query: 895  RRXPPPPXXXGXPA--RXPPPXXPAXAXXGXXAAXPPXXGXGA 1017
            R  PPPP     P+  R PPP   + A     A  P   G  A
Sbjct: 358  RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,737
Number of Sequences: 5004
Number of extensions: 17856
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 541237406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)