Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_P21
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   117   2e-27
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    33   0.056
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.8  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   8.5  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  117 bits (282), Expect = 2e-27
 Identities = 54/94 (57%), Positives = 72/94 (76%)
 Frame = +3

Query: 300 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTXGDLVEVRDKLLENKVQAPARPGAI 479
           KNTM+R+A++  +++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP AI
Sbjct: 55  KNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAI 114

Query: 480 APLSVVIPAHNTGLXPEKTSFFQALSIPYQDFKG 581
           APL V +PA NTG+ P KTSFFQAL IP +  +G
Sbjct: 115 APLDVFVPAGNTGMEPGKTSFFQALGIPTKITRG 148



 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 26/42 (61%), Positives = 31/42 (73%)
 Frame = +1

Query: 562 PTKISKGTIEIIXDVHILKPGDXVGASEAXLXXMLNISPFSY 687
           PTKI++GTIEI  DVH++     VG SEA L  MLNISPF+Y
Sbjct: 142 PTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTY 183



 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 22/48 (45%), Positives = 32/48 (66%)
 Frame = +2

Query: 158 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGK 301
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGK
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGK 55


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
 Frame = +3

Query: 300 KNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTXGDLVEVRDKLLENKVQAP- 461
           K  +M KA+     ++H +N   L KLL    G VG +FT     EV     E+ VQ   
Sbjct: 69  KTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDF 124

Query: 462 ARPGAIAPLSVVIPA 506
           AR GA+AP + VIPA
Sbjct: 125 ARAGAVAPFTHVIPA 139


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 433 LSRTSTRSPXVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 308
           L +T  +S    + PTLP +   + S +G+LSR + + ++ I
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -2

Query: 529 SGXRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRT---STRSPXVNTKPTLPLMCGNSF 359
           +G  PV    +  + G++ P  AGAW L  N L       T+   +NT P  PL  G  F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194

Query: 358 SRAGL 344
           S   L
Sbjct: 195 SEEEL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,030
Number of Sequences: 5004
Number of extensions: 63805
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)