Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_P20
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 31 0.92
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 0.92
01_06_0826 - 32252546-32253208 31 0.92
03_06_0700 + 35616619-35617069,35619123-35619502 31 1.6
10_08_0223 - 15986763-15987575 30 2.1
07_01_0710 - 5355277-5355666 30 2.1
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 29 6.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.6
05_04_0119 - 18169729-18169887,18170515-18170653,18170728-181709... 28 8.6
04_04_0194 - 23485978-23486833,23486933-23487062,23487154-23487286 28 8.6
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 31.5 bits (68), Expect = 0.92
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 624 PPGSSLVRSPVPTPAAYRIPVR-PFSLRXAWRFLIXH 731
PP + +P PA YR+P+R P S W+ I H
Sbjct: 112 PPAHRRLNCLIPPPAGYRVPIRWPRSRDEVWKANIPH 148
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 31.5 bits (68), Expect = 0.92
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 517 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPL 666
CWR + T D Q + +KD P + PSC L+F PL
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPL 332
>01_06_0826 - 32252546-32253208
Length = 220
Score = 31.5 bits (68), Expect = 0.92
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 581 EVAKPDRTIKIPGVSPWKLPRALSCSDPCRLPDTCPPFLPSGXVALSHXS 730
EV+KP R + G LP L+C C+ PP P+G A S S
Sbjct: 5 EVSKPSRRLSPKGSFKLSLPSLLACGQ-CKATAVSPPESPTGVGARSFSS 53
>03_06_0700 + 35616619-35617069,35619123-35619502
Length = 276
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 633 SSLVRSPVPTPAAYRIPVRPFSLRXAWRFLIXHAVXXSXRCXSSA 767
S L + +P P + R+P+ P + WR + A S RC ++A
Sbjct: 13 SPLPGASLPRPVSARVPLLPRASPPTWRLSVGSARARSTRCLAAA 57
>10_08_0223 - 15986763-15987575
Length = 270
Score = 30.3 bits (65), Expect = 2.1
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Frame = -2
Query: 702 EGRKGGQVSGKRQGSEQESARGSFQGE-TPGIFIVLSGFATS--DLSVDFCDARQGGGA- 535
EG GG G GS + G QG G I ++ +S D + + DA GGG
Sbjct: 138 EGGGGGGGGGSNGGSGYGAGAGVGQGAGESGSSIAMAPSPSSGGDYNGGYADAAGGGGGG 197
Query: 534 ---YGKTPATRPFYGSXPFAG 481
+G PA P YG AG
Sbjct: 198 GGGHGGGPAASPSYGVGAGAG 218
>07_01_0710 - 5355277-5355666
Length = 129
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 719 KAPRXPKGERADRYPV--SGRGRNRRAHEGASRGKRLV 612
+ P P GE +R SG GR RR EGA G LV
Sbjct: 88 RGPLAPAGESRERTSAANSGEGRRRRVAEGARDGSGLV 125
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 787 PNPRSXRPLPPYPVTIRXXSXPXXXPXYXP 876
P P + RPLPP+P T+ P P Y P
Sbjct: 192 PPPEALRPLPPFPPTM---LAPPAYPYYHP 218
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 297 NESAN---ARGEAVCVLGALPLPRSLTRCAR 380
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>05_04_0119 -
18169729-18169887,18170515-18170653,18170728-18170974,
18171585-18171968,18172251-18172540,18172884-18173295,
18173409-18173420,18173943-18174135
Length = 611
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 624 PPGSSLVRSPVPTPAAYRIPVR-PFSLRXAWRFLIXHA 734
PP + VP P Y+IP+R P S WR + H+
Sbjct: 131 PPQEKRLFCLVPPPNDYKIPIRWPTSRDYVWRSNVNHS 168
>04_04_0194 - 23485978-23486833,23486933-23487062,23487154-23487286
Length = 372
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = -2
Query: 837 ADSYRIRGQGSG*TGVWAHSPXWXRTTYTEXRXXQREX*ESATXPEGRKGGQVSGKRQGS 658
A Y + G G T +W+H + ++ TE +RE E G GG G
Sbjct: 283 AQGYVLGGDGDQGTSMWSHQSLYSGSSGTE--EARRELPEKGNDSVGSSGGDDDAADDG- 339
Query: 657 EQESARGSFQGETPGIF 607
++S +G+ + G+F
Sbjct: 340 -KDSGKGA-ASDMSGLF 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,787,890
Number of Sequences: 37544
Number of extensions: 475023
Number of successful extensions: 1639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1637
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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