Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_P17
         (1003 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.35 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   10.0 

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.35
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 756 PPPPXPPXPPPXXXXP 803
           PP P PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 25.4 bits (53), Expect = 0.81
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 752 TXPPPTPXXPPPSXPXPXPA 811
           T P P P  PPPS   P  A
Sbjct: 337 TPPKPAPPPPPPSSSGPDSA 356



 Score = 21.8 bits (44), Expect = 10.0
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 761 PPTPXXPPPSXPXPXPAXAAL 823
           PP P  PPP      P  A L
Sbjct: 338 PPKPAPPPPPPSSSGPDSAKL 358


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 12/50 (24%), Positives = 17/50 (34%)
 Frame = +2

Query: 689 PXXLXTPHPXXXTFXXHSPXXTXPPPTPXXPPPSXPXPXPAXAALXXFTG 838
           P    +PH         SP      P P  PP + P   P+   +   +G
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 823 ERXGRGXGXXXXGGGXGGXGG 761
           E  GRG G     GG  G GG
Sbjct: 76  EETGRGKGRGHGKGGSRGRGG 96


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 173 HHRSLGQSDAGEENYELGGHDVL 105
           HH+    + AG +   L GH VL
Sbjct: 920 HHQIQVSTSAGLQTIRLSGHSVL 942


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = +1

Query: 724 HXXXPFSTXHXPPPHXXPXPPLXPXP 801
           H   P +      PH  P PP  P P
Sbjct: 450 HSSYPAAIQIGHTPHHHPHPPETPGP 475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,688
Number of Sequences: 438
Number of extensions: 7008
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33258225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)