Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_P15
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    68   2e-12
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    39   9e-04
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    36   0.006
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   2.8  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   3.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.5  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   8.5  

>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
 Frame = +1

Query: 79  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID--ATTAAFK 252
           MP+Y CDYC  +LTHDS SVRK H  GR H  NV+ YY K  +E+AQ  ++  A++   K
Sbjct: 1   MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEERASSGFLK 60

Query: 253 AG 258
            G
Sbjct: 61  KG 62


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 39.1 bits (87), Expect = 9e-04
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 79  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 183
           +PKYYC YC  ++  D+P  R++H    KH+D +K
Sbjct: 8   IPKYYCKYCQIFV-KDTPFARRSHEQTYKHQDAIK 41


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +1

Query: 103 CDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKNCSKSIW 282
           CD  L H+ P + K++ T R H  + + ++Q+ +    Q+       A  +  N S+   
Sbjct: 89  CDQCLKHNIPCIYKSNSTKRSHSRHEEIHHQQQLHLNHQYQHQHKNVAANSIDNLSRQYS 148

Query: 283 QQRHCNT 303
           Q  H NT
Sbjct: 149 QPNHINT 155


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 328 HYRRIPRWWYCSAFVAKWILSNF 260
           +Y+  P+WWY + F+  + L+ F
Sbjct: 527 NYKEAPQWWYATLFIVVFGLTIF 549


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
 Frame = +1

Query: 202 MEEQAQHLIDATTAAFKAGKNCSKS--IWQQR---HCNTTTLGSFGNGTRRTPTSCTRW 363
           +EE A  L  A +   K  +NCS+S  +W +    H          N  ++ P S T W
Sbjct: 287 LEEVANKLSQAQSLILKGCENCSRSEDVWLEAIRLHPAAEAKVIIANAVKKLPKSVTLW 345


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = +2

Query: 761 PPPYXXL*XYPXSXKXHXPPXXPXTXXPPPXXPRSGXXXXXXP 889
           PPP   +   P       PP  P    PPP  P  G      P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 121 HDSPSVRKTHCTGRKHKDNV-KFYYQKWMEEQAQHL 225
           HDSPS+RK    G    D   K  Y   + ++A+HL
Sbjct: 467 HDSPSIRKLIDIGEIDFDQAFKICYDSNLLDEAKHL 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,935
Number of Sequences: 5004
Number of extensions: 39138
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)