Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_P15
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical pr...   111   9e-25
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    29   4.6  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    29   4.6  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical
           protein F08B4.7 protein.
          Length = 142

 Score =  111 bits (266), Expect = 9e-25
 Identities = 45/61 (73%), Positives = 51/61 (83%)
 Frame = +1

Query: 79  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAG 258
           MPKYYCDYCDT+LTHDSPSVRKTH  GRKHKDNV+ +YQKWME+QAQ L+D T  AF   
Sbjct: 1   MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQTARAFATN 60

Query: 259 K 261
           +
Sbjct: 61  R 61


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 318 GSQGGGIAVPLLPNGF*AIFACFECRCCCI 229
           G+ GG   V ++ NG   I  C  CR CC+
Sbjct: 154 GTAGGTYYVIIVQNGQRVIVNCATCRLCCV 183


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 318 GSQGGGIAVPLLPNGF*AIFACFECRCCCI 229
           G+ GG   V ++ NG   I  C  CR CC+
Sbjct: 77  GTAGGTYYVIIVQNGQRVIVNCATCRLCCV 106


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/77 (24%), Positives = 29/77 (37%)
 Frame = +1

Query: 256 GKNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSRYDTSSIYGSWRSYGTXNDDGS 435
           G N     W +R         +GN          +WSS+Y  +  Y S   YG  +    
Sbjct: 10  GMNDINPRWFRRQYGWAGSPYYGNAQYYETQPQQQWSSQYQNNQNYYSPYFYGYQHQ--Q 67

Query: 436 TWANAANDGNEXAYDGP 486
           TW N+  +  +  Y+ P
Sbjct: 68  TWQNSNQNQYQTLYNRP 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,374,465
Number of Sequences: 27780
Number of extensions: 246919
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)