Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_P14
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...   110   2e-25
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    28   1.5  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    27   3.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.6  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    27   4.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   4.6  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   4.6  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   8.0  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score =  110 bits (265), Expect = 2e-25
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 17/232 (7%)
 Frame = +1

Query: 163 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLD 342
           +V NF AGPA +   V E    +  NF+  G+ + E SHRS     +    +   R L +
Sbjct: 6   EVVNFAAGPAAMITSVVEEFGKDFVNFQGLGMGVAEISHRSKQGSGIVTSAESNFRKLYN 65

Query: 343 VPDNYKVXXXXXXXXXXXXXVPLNLI---------SRTGTADYVVTGAWSXXXXXXXXXY 495
           +P+N+ +                N+          +++  A+Y++TGAWS          
Sbjct: 66  IPENFHILFMQGGGTEQFAACLYNVYAHHALKNGNAKSLVANYIITGAWSKKAYAEAERL 125

Query: 496 G-KVNLVLPPTD---KYEDIPD--QTKWNLDPNASYVHICTNETIHGVEFDFIPDT--KG 651
           G   ++ +   +   KY  +P+    K+  D   S V+ C NET+HGVEF+  P    KG
Sbjct: 126 GFPCHVAVDMKELAGKYGSLPEDKDLKFTPDGETSLVYYCDNETVHGVEFNEPPTNIPKG 185

Query: 652 VPLIADMSSNIMSKKVDVSKFGVIYAGAQXNIGTSGVXLVIVXXDLLNQALP 807
              + D+SSN +S+K+D +K  +I+AGAQ N G +G+ +V V   +L +  P
Sbjct: 186 AIRVCDVSSNFISRKIDFTKHDIIFAGAQKNAGPAGITVVFVRDSVLARPTP 237


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 574 WDQGSILSDQVCLHIYLSVVAPNLLSHIFSPPW 476
           WD+  +L+++  L I L  +AP     +FSPPW
Sbjct: 275 WDRAELLANK--LGISLPKMAPLDFGDLFSPPW 305


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 698 TFFDIMFEDISAIKGTPFVS 639
           TF+DI+FED+  +  +PF S
Sbjct: 540 TFWDILFEDVPGVFQSPFQS 559


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 223  KNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLL 339
            +N+ +      +SLL  S  S++Y  L +   D+V N+L
Sbjct: 1197 RNQWSQVRALALSLLSDSLNSTSYRLLGISCSDMVSNIL 1235


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 223 KNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNY 357
           +++ T ++ SG+  L T HR     KLN +   ++  +LD+ + +
Sbjct: 211 ESQSTMYKKSGLKTLVTLHRDLGIDKLNQDEVTIITAVLDLREKH 255


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 722  ITPNFETSTFFDIMFEDISAIKGT 651
            ITPN  TS FFD++ +D     G+
Sbjct: 1438 ITPNLLTSQFFDVLTKDALYTNGS 1461


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 202 EEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVV 327
           E V  +  N + +   + ++LL T H S T  KLNV   D++
Sbjct: 604 ESVDSVTCNYVLSSSKNPMNLLFTLHNSITDGKLNVHCNDII 645


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 418 LSLKEQLQIDQDPHQLKTALCSCPVHLISFAQ 323
           L+LK+ + I  + H L  A+CS     ISF Q
Sbjct: 352 LTLKDNICIIDEAHNLIDAICSMHSSSISFRQ 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,678
Number of Sequences: 5004
Number of extensions: 68653
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)