Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_P05
         (1258 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 62   GGAXXGXXGXGGXGGAXXXGGGG 130
            GG+  G  G GG GGA      G
Sbjct: 1707 GGSLAGLGGLGGLGGAAEASAAG 1729


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 62   GGAXXGXXGXGGXGGAXXXGGGG 130
            GG+  G  G GG GGA      G
Sbjct: 1703 GGSLAGLGGLGGLGGAAEASAAG 1725


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 35  GGEGQXXXXGGAXXGXXGXGGXGGAXXXGGGG 130
           GG G     GG   G  G     GA   GGGG
Sbjct: 20  GGPGSSSA-GGVVTGASGGSIVVGANNGGGGG 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,743
Number of Sequences: 438
Number of extensions: 2947
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42982554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)