Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_P03
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    35   0.014
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    31   0.17 
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    29   0.67 
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    29   0.89 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   2.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   2.1  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    27   4.8  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   6.3  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   8.3  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   8.3  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 496 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSST--VIAPLT 669
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T +ST  V   + 
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360

Query: 670 PSNTTGTLSPP 702
           P++T+ T +PP
Sbjct: 361 PTSTSSTSTPP 371



 Score = 33.9 bits (74), Expect = 0.031
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 496 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAP-LT 669
           +TP   P   S  S+P P   T+   + S P  T ST  + +  +     S+T + P + 
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306

Query: 670 PSNTTGTLSPP 702
           P++T+ T +PP
Sbjct: 307 PTSTSSTSTPP 317



 Score = 32.3 bits (70), Expect = 0.096
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = +1

Query: 496 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPS 675
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T +ST   P+TP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTPT 412

Query: 676 NTTGTLSPPCT 708
               + S P T
Sbjct: 413 VPPTSSSTPLT 423



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 496 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTP 672
           +TP   P   S  S+P P   T+   + S P  T ST S  T   +    SS++  P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249

Query: 673 S 675
           +
Sbjct: 250 T 250



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +1

Query: 487 LHSVTPKTKPARKSPGSLPPCW-KTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAP 663
           L++ TP T P   S  S    W  TT  T  S    T+ST   +T      T  ++  + 
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657

Query: 664 LTPSNTTGTLS 696
            T S++T T S
Sbjct: 658 STSSSSTATSS 668


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 556 TTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPPCT 708
           +T  TS   PP T+   ++ T        ++T + P T  NTT T +PP T
Sbjct: 63  STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTT 113



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 538 LPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPPCT 708
           +PP   +   T+ + PP T+   ++       +  ++T   P T  N+T T+ PP T
Sbjct: 70  VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTT 126



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +1

Query: 490 HSVTPKTKPARKSPGSLPPCWKTTEF--TSRSCPPRTNST*SSITRKVLXMTVSSTVIAP 663
           H+ T  T P   S  +      TT    T+ + PP T+   ++          ++TV+ P
Sbjct: 77  HNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPP 136

Query: 664 LTPSNTTGTLSPPCTKA 714
            T  NTT T+ PP T A
Sbjct: 137 TTHVNTT-TVVPPTTHA 152



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 496 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTN-ST*SSITRKVLXMTVSSTVIAPLTP 672
           V P +     +  ++PP   T+  T+ + PP T+ +T ++       +  ++TV+ P T 
Sbjct: 70  VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127

Query: 673 SNTTGTLSPPCT 708
            NTT T+ PP T
Sbjct: 128 VNTT-TVVPPTT 138


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 578 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 477
           DLE N +V Q+ G   G+FL G  FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 222 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 365
           ET   K S   K +K  +   + +++++  K NT++ A Q W+K  KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 189 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 305
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 553 KTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPPCT 708
           +TTE T+    P T ++  S T  ++  T   T I P+ P N + ++S P T
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAPPT 901


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 710 FVHGGLKVPVVFEGVSGAITVDDTVI 633
           F H  +    V  G+ GAIT+DD++I
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSII 132


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 655 IAPLTPSNTTGTLSPPCTKA 714
           + PL PS+ +G LSPP  KA
Sbjct: 146 VHPLRPSHVSGPLSPPEPKA 165


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 426 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 518
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -2

Query: 325 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 146
           M F    ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 145 EASAHTARTKA 113
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,443,591
Number of Sequences: 5004
Number of extensions: 69575
Number of successful extensions: 294
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)