Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_O18
         (959 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.9  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   6.9  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   6.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 532 SGPPXPXXPPPXXALTLXXXSMPPPPXAHXPXP 630
           S PP P  PPP  A      S  PP  +  P P
Sbjct: 142 SAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
 Frame = +1

Query: 457 PPYXGRXSPFSEXXLXPXXIPXLXXSGPPXPXXPPPXXALTLXXXSMPP-PPXAHXPXP 630
           PP     +P S     P  +P    + PP P   P    L     + PP PP A  P P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 505 PXXIPXLXXSGPPXPXXPPPXXALTLXXXSMPPPPXA 615
           P  +P L  S P  P  PPP         + PP P A
Sbjct: 242 PERVPSL--SAPAPPPIPPPSNGTVSSPPNSPPRPIA 276


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +1

Query: 457 PPYXGRXSPFSEXXLXPXXIPXLXXSGPPXPXXPPPXXALTLXXXSMPPPPXA 615
           PP      P       P   P     GPP P  PPP           PPPP A
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP--PPPPGVAGAGPPPPPPPPPA 784


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +1

Query: 118 LCWLWPTLKETATNLLTTARTSL-ILPKTTTLMETATNLSTTVHITWTV 261
           LCW+WP  K    N L    + L ILP T    +   N +      W +
Sbjct: 361 LCWIWP--KNRVVNQLFGYNSGLGILPLTFDWQQVVYNSNPLASPWWVI 407


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 153 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGPTLLQAY 290
           +E +D  PY++N P+     G   E     A    R QGP+LL+ Y
Sbjct: 734 HEIVDEEPYLLNDPEKELELGCTLE----SALKRARAQGPSLLEDY 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,543
Number of Sequences: 5004
Number of extensions: 39234
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)