Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_O16
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   155   6e-38
07_03_0361 + 17215312-17216217                                         31   1.6  
03_05_0639 - 26323328-26323630,26323962-26324057,26324458-263247...    28   8.6  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  155 bits (375), Expect = 6e-38
 Identities = 69/110 (62%), Positives = 89/110 (80%)
 Frame = +3

Query: 72  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 251
           MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+ 
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 252 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 401
            + LPKLYAK+H+CVSCAIH+ +VR RS+++RR R PP+  F R +  P+
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109


>07_03_0361 + 17215312-17216217
          Length = 301

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
 Frame = +3

Query: 27  GNSLRFGSPGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIV 206
           G ++R    G+E    T K++ GG    G G  + V+  +        +A K+ ++  +V
Sbjct: 43  GGAVRAAVSGTEQAPETTKKKGGGG---GGGDERVVQVHSAEELDGALRAAKERLV--VV 97

Query: 207 EAAAVRDINDASVYP-MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKD 344
           E AA   +N + +YP M +L +    + + +     S   R   +++
Sbjct: 98  EFAASHSVNSSRIYPCMVELSRTCGDVDFLLVMGDESDATRELCRRE 144


>03_05_0639 -
           26323328-26323630,26323962-26324057,26324458-26324730,
           26325266-26325398,26325507-26325553
          Length = 283

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 18  LTIGNSLRFGSPGSEVRNMTRKRRNGGRAKHGRG 119
           L IG   + GSPG +V    ++RRNG +   G G
Sbjct: 208 LDIGCDEQTGSPGGKVGAADQRRRNGNQGGGGGG 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,911,662
Number of Sequences: 37544
Number of extensions: 366616
Number of successful extensions: 822
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)