Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_O13
(883 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 221 4e-58
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 219 3e-57
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 92 6e-19
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 92 6e-19
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 73 4e-13
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 68 1e-11
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 67 2e-11
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 64 2e-10
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 54 1e-07
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 41 0.001
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 41 0.001
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 41 0.001
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 38 0.007
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 35 0.089
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 35 0.089
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 35 0.089
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 35 0.089
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 35 0.089
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 35 0.089
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.36
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.83
AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical... 31 1.4
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 30 2.5
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 30 2.5
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 30 2.5
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 30 2.5
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 29 3.3
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 4.4
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 4.4
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 5.8
Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical pr... 28 7.7
AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine... 28 7.7
AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine... 28 7.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 221 bits (541), Expect = 4e-58
Identities = 113/137 (82%), Positives = 122/137 (89%), Gaps = 8/137 (5%)
Frame = +3
Query: 120 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 299
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 300 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 455
KDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 456 VDFSSEVTAALRVTDGA 506
VDFSSEVTAALRVTDGA
Sbjct: 121 VDFSSEVTAALRVTDGA 137
Score = 35.5 bits (78), Expect = 0.051
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = +1
Query: 544 QTXTVLGQGFAXRXXPILFLXKWTXPLFEXPXEXEKLFPXFPXXVK 681
QT TVL Q A R P+LF+ K L E E+LF F V+
Sbjct: 150 QTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVE 195
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 219 bits (534), Expect = 3e-57
Identities = 112/137 (81%), Positives = 121/137 (88%), Gaps = 8/137 (5%)
Frame = +3
Query: 120 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 299
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 300 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 455
KDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 456 VDFSSEVTAALRVTDGA 506
VDFSSEVTAAL VTDGA
Sbjct: 121 VDFSSEVTAALGVTDGA 137
Score = 35.5 bits (78), Expect = 0.051
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = +1
Query: 544 QTXTVLGQGFAXRXXPILFLXKWTXPLFEXPXEXEKLFPXFPXXVK 681
QT TVL Q A R P+LF+ K L E E+LF F V+
Sbjct: 150 QTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVE 195
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 91.9 bits (218), Expect = 6e-19
Identities = 52/110 (47%), Positives = 70/110 (63%)
Frame = +3
Query: 171 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 350
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 351 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 500
E LINLIDSPGHVDFS EVT+AL ++D
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSD 108
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 91.9 bits (218), Expect = 6e-19
Identities = 52/110 (47%), Positives = 70/110 (63%)
Frame = +3
Query: 171 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 350
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 351 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 500
E LINLIDSPGHVDFS EVT+AL ++D
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSD 108
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 72.5 bits (170), Expect = 4e-13
Identities = 42/110 (38%), Positives = 62/110 (56%)
Frame = +3
Query: 174 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 353
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+K+ ++
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL- 97
Query: 354 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 503
+G+L+NLID+PGHVDFS+EV+ +L V DG
Sbjct: 98 -------------------RHRGYLLNLIDTPGHVDFSAEVSRSLAVCDG 128
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 67.7 bits (158), Expect = 1e-11
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Frame = +3
Query: 153 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITI 329
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +I
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 330 KSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 503
KS +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG
Sbjct: 185 KSQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADG 227
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 66.9 bits (156), Expect = 2e-11
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Frame = +3
Query: 156 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIK 332
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IK
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 333 STAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 503
S +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG
Sbjct: 61 SQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADG 102
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 63.7 bits (148), Expect = 2e-10
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Frame = +3
Query: 174 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKSTAIS 347
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT++S A++
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84
Query: 348 MFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 503
+ + KG INLID+PGHVDF EV +RV DG
Sbjct: 85 LDW--------------------KGHRINLIDTPGHVDFRVEVERCVRVLDG 116
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 54.4 bits (125), Expect = 1e-07
Identities = 41/111 (36%), Positives = 56/111 (50%)
Frame = +3
Query: 174 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 353
IRN+ + AH+D GK+T+T+ ++ AG I E R D D F
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRIDSMH--EVRGKDDVGATMD------------F 89
Query: 354 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 506
+LE + + I + G IN+ID+PGHVDF+ EV ALRV DGA
Sbjct: 90 MDLERQRGITIQSA-ATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGA 139
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/108 (28%), Positives = 50/108 (46%)
Frame = +3
Query: 180 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 359
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 108
Query: 360 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 503
++ I P + ++ N+I ++ + V AA TDG
Sbjct: 109 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDG 148
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/108 (28%), Positives = 50/108 (46%)
Frame = +3
Query: 180 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 359
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 360 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 503
++ I P + ++ N+I ++ + V AA TDG
Sbjct: 110 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDG 149
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/108 (28%), Positives = 50/108 (46%)
Frame = +3
Query: 180 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 359
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 360 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 503
++ I P + ++ N+I ++ + V AA TDG
Sbjct: 110 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDG 149
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 38.3 bits (85), Expect = 0.007
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +3
Query: 168 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 347
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 221
Query: 348 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGA 506
+ E EE+ +T R E I L+D+PGH DF S + D A
Sbjct: 222 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAA 275
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 38.3 bits (85), Expect = 0.007
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +3
Query: 168 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 347
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 239
Query: 348 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGA 506
+ E EE+ +T R E I L+D+PGH DF S + D A
Sbjct: 240 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAA 293
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 34.7 bits (76), Expect = 0.089
Identities = 33/108 (30%), Positives = 49/108 (45%)
Frame = +3
Query: 180 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 359
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 360 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 503
E L ++ D S+ F+ N+I +D + V AA TDG
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDG 144
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 34.7 bits (76), Expect = 0.089
Identities = 35/117 (29%), Positives = 54/117 (46%)
Frame = +3
Query: 156 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 335
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 336 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 506
+ + E + + I + ++ K + I +ID+PGH DF + D A
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCA 112
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 34.7 bits (76), Expect = 0.089
Identities = 35/117 (29%), Positives = 54/117 (46%)
Frame = +3
Query: 156 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 335
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 336 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 506
+ + E + + I + ++ K + I +ID+PGH DF + D A
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCA 112
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 34.7 bits (76), Expect = 0.089
Identities = 35/117 (29%), Positives = 54/117 (46%)
Frame = +3
Query: 156 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 335
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 336 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 506
+ + E + + I + ++ K + I +ID+PGH DF + D A
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCA 112
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 34.7 bits (76), Expect = 0.089
Identities = 35/117 (29%), Positives = 54/117 (46%)
Frame = +3
Query: 156 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 335
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 336 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 506
+ + E + + I + ++ K + I +ID+PGH DF + D A
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCA 112
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 34.7 bits (76), Expect = 0.089
Identities = 33/108 (30%), Positives = 49/108 (45%)
Frame = +3
Query: 180 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 359
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 360 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 503
E L ++ D S+ F+ N+I +D + V AA TDG
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDG 144
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.36
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 156 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 251
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 159 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 284
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical
protein Y105C5A.23 protein.
Length = 415
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +1
Query: 211 ASQPSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSLCSSSLKRKI*YSSQ 390
AS+ + + F R V+ ++EPE+P++ R+ + PL RPS+ S +
Sbjct: 271 ASEWNPLKTFSRHVN--IKEPEKPMTTPRIVVSDETEVPLTQRPSISPSEASAVMRTGVH 328
Query: 391 TLTS 402
T TS
Sbjct: 329 TSTS 332
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 29.9 bits (64), Expect = 2.5
Identities = 35/136 (25%), Positives = 51/136 (37%)
Frame = +3
Query: 180 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 359
NM + HVD GKST+ L+ G++ R E + + E+ R S + E
Sbjct: 111 NMVFVGHVDAGKSTIGGQLMFLTGMV-DKRTLEKYEREAK--EKGRESWYLSWCMDTNDE 167
Query: 360 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAPGGC*LCVWCV 539
EK E ++ F I +D+PGH F + D L V +
Sbjct: 168 EREKGKTVEVGRAYFETEKRHFTI--LDAPGHKSFVPNMIVGANQAD-------LAVLVI 218
Query: 540 CTNRNSTGSGFCRXXQ 587
R +GF R Q
Sbjct: 219 SARRGEFETGFDRGGQ 234
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 388 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 212
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 211 P 209
P
Sbjct: 102 P 102
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 442 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLMVMQ 317
S+ L+ PF L +R +G+ + FSS S + MAV ++ +Q
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVLSLQ 109
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 388 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 212
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 211 P 209
P
Sbjct: 102 P 102
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 105 HKPSKMVNFTVDEIRGMMDKKRN-IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 281
H P K+ DE+ M ++KRN + N A+++ + +S+ S I G A
Sbjct: 610 HVPEKVAEDIADEVARMTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIEGVNATLQ 669
Query: 282 RFTDTRKDEQD 314
R +QD
Sbjct: 670 TIEKQRVQQQD 680
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 207 DRRGRSQTCCGYSASCPSSHG 145
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 207 DRRGRSQTCCGYSASCPSSHG 145
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 122 GEFHGRRDPWDDGQEAEYPQHVCDR 196
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 122 GEFHGRRDPWDDGQEAEYPQHVCDR 196
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical
protein R06A4.10b protein.
Length = 511
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 31 SLRFXPFSKRTPLLAYGSW-FNRTKI 105
+LRF PF ++ L +GSW F+ TKI
Sbjct: 115 NLRFFPFDVQSCRLLFGSWTFDNTKI 140
>Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical
protein R06A4.10a protein.
Length = 514
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 31 SLRFXPFSKRTPLLAYGSW-FNRTKI 105
+LRF PF ++ L +GSW F+ TKI
Sbjct: 115 NLRFFPFDVQSCRLLFGSWTFDNTKI 140
>AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine
receptor alternativevariant b protein.
Length = 459
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 31 SLRFXPFSKRTPLLAYGSW-FNRTKI 105
+LRF PF ++ L +GSW F+ TKI
Sbjct: 60 NLRFFPFDVQSCRLLFGSWTFDNTKI 85
>AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine
receptor 20 (63.9kD) alternative variant a protein.
Length = 553
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 31 SLRFXPFSKRTPLLAYGSW-FNRTKI 105
+LRF PF ++ L +GSW F+ TKI
Sbjct: 157 NLRFFPFDVQSCRLLFGSWTFDNTKI 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,116,978
Number of Sequences: 27780
Number of extensions: 352636
Number of successful extensions: 1076
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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