Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_O08
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...   242   5e-65
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.6  

>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score =  242 bits (592), Expect = 5e-65
 Identities = 111/221 (50%), Positives = 150/221 (67%)
 Frame = +3

Query: 114 ILAYSGGLDTSCILKWLIQKNYEVVCFMADVGQNEDFEXXXXXXXXXXXXXXXXEDLRKE 293
           +LAYSGGLDTSCIL WLI++ +EV+C+MA+VGQ ED++                EDLR+E
Sbjct: 9   VLAYSGGLDTSCILAWLIEEGWEVICYMANVGQEEDWDAAREKALKVGAKKVYVEDLREE 68

Query: 294 FVCNYMLPAVQMGLVYESRYYLGTSLARPCITVGLVNTAKNLGAKYIAHGATGKGNDQVR 473
           F+ + ++PA Q   +YE+ Y LGTSLARP I    +  A+      ++HG TGKGNDQVR
Sbjct: 69  FINDTVIPAAQANAIYENVYLLGTSLARPIIARRQIQIAEKENCIAVSHGCTGKGNDQVR 128

Query: 474 FELSMYSLWPEGKIIAPWRIPEFFQRFQGRTDLIEYAKKENIPVSATPKEXWSTDENIMH 653
           FEL+ Y+L P+ ++IAPWR+P FF+RF GR DL+EYA  + IPV+ T K+ WS DENI+H
Sbjct: 129 FELAYYALKPDVQVIAPWRLPVFFERFAGRKDLLEYAAAKGIPVTQTTKKPWSMDENIVH 188

Query: 654 ISYESGVLXDPAAIPPGGIFKMTRDLXKADDYAXVLDIHLK 776
            SYE+G+L DP+  PP  ++K+T D   A D    L IH +
Sbjct: 189 CSYEAGILEDPSMTPPKDMWKLTVDPKDAPDEVEELSIHFE 229


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 363  TSLARPCITVGLVNTAKNLGAKYIAHGATGK 455
            T L R C +V L + A NLG   I    TGK
Sbjct: 1866 TDLTRNCFSVLLHSIASNLGGSPIGPAGTGK 1896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,486,870
Number of Sequences: 5004
Number of extensions: 71904
Number of successful extensions: 170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)