Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_O07
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.016
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.016
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 755 PPPPXGXXXXXXPPPPPPP 811
           PPPP G      PPPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 755 PPPPXGXXXXXXPPPPPPP 811
           PPPP         PPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 755 PPPPXGXXXXXXPPPPPPP 811
           PPPP G      PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 31.5 bits (68), Expect = 0.15
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 755 PPPPXGXXXXXXPPPPPPP 811
           PPPP        PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 31.1 bits (67), Expect = 0.19
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 755 PPPPXGXXXXXXPPPPPPP 811
           PPPP        PPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 755 PPPPXGXXXXXXPPPPPPP 811
           P PP        PPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 755 PPPPXGXXXXXXPPPPPPP 811
           PPPP         PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 755 PPPPXGXXXXXXPPPPPPP 811
           PP   G      PPPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 755  PPPPXGXXXXXXPPPPPPP 811
            PPPP        PP  PPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPP 1733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,584
Number of Sequences: 5004
Number of extensions: 27357
Number of successful extensions: 274
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)