Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_O06
(927 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar... 42 9e-05
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 30 0.53
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 29 0.70
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 0.93
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 27 2.8
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 3.8
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 27 5.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.6
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 26 8.7
>SPCC970.06 |||cargo receptor for soluble proteins
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 302
Score = 42.3 bits (95), Expect = 9e-05
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = +3
Query: 222 LPTVARLCLISTFLEDGLRMWFQWSEQ----RDYMDMSXGCGKFLATMFVIVNLFGQLGG 389
+P + R +++T+ ED +R+ QW EQ RDY G L +FV V L L G
Sbjct: 54 MPLLGRFLIVATYFEDAIRIVTQWPEQVSYMRDYRRFRFGTAPLL--LFVCVVL--MLVG 109
Query: 390 CVMVLGRLXVDIACGVLXXIVVLXTFXYXIL 482
+V+ + A G L + +L F Y ++
Sbjct: 110 STLVVFKKRQAYAIGSLLFVTLLQAFAYGLI 140
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 29.9 bits (64), Expect = 0.53
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -1
Query: 360 SQTLWRGICRSXRTCPCSLS 301
++TLW ICR RTCP SLS
Sbjct: 352 ARTLW-AICRHLRTCPLSLS 370
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 29.5 bits (63), Expect = 0.70
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 150 QIPNEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQ 290
QIP STA+ A+ + ++ + LP V C TF D L +FQ
Sbjct: 41 QIPQIEGSTAKRDAEHLGKRHREFLPRVTAYCTCDTFRVDLLFKFFQ 87
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.1 bits (62), Expect = 0.93
Identities = 20/53 (37%), Positives = 21/53 (39%)
Frame = -3
Query: 922 GEGXXGGGEXWEGGX*GGPGXXRRXGW*QKWGGXSRGEXGXXGXPGLVAGXGG 764
G G GG GG GG G R G +GG SRG G G G G
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGG----FGGGSRGGFGGGSRGGSRGGFRG 184
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = -3
Query: 223 KTFLPFRIT*SATSSAVDTYSLGI---CIFHAEHST--NTEKRNLTESEIQVVTSLVGRP 59
KTF PF + S + LG+ C F +++ N EKR + +Q+ +P
Sbjct: 278 KTFRPFHLPSDVHSLDYERAILGMKLSCGFEILYNSKENVEKRTEIDEYLQI------QP 331
Query: 58 LSNDQNLKEFPIV 20
L D+++K+ P++
Sbjct: 332 LPTDEDIKKIPLI 344
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 255 TFLEDGLRMWFQWSEQRDYMDM 320
T +DGLR+W W +D D+
Sbjct: 181 TIRKDGLRLWGSWKRGKDESDL 202
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 390 ILLIDQINLLSQTLWRGICRSXRTCPCSLS 301
+ L+ +NL S L + +C S + PC L+
Sbjct: 6 LFLLQNVNLESNYLLKRVCLSLKLSPCKLT 35
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = +2
Query: 605 NHPXXLLATSARXPSXXPLHVPPXPXPFXQFXIPAHXYHX----PPPXPSXTNIXXPP 766
N P +A + P+ PP P P + A + PPP PS N PP
Sbjct: 269 NSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 261 LEDGLRMWFQWSEQRDYMDMSXGCGKFLATMFVIVNLFGQLGGCVM 398
L DG+R+WF+W Y+ + G + + + N+ G+ C M
Sbjct: 601 LTDGMRVWFEWCANA-YLVLRNG-SQIKLSSTEVHNISGKAFSCNM 644
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,240
Number of Sequences: 5004
Number of extensions: 45052
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -