Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_O03
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 34 0.12
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 31 1.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.5
AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family ... 29 3.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.9
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 5.9
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 5.9
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 5.9
AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen pro... 28 7.8
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 24 9.8
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +2
Query: 572 PRPRIPPLXEG*FGXPXPXXKXPXGXXXGPXPPPPPXXXXG 694
P P PPL + G P P P P PPPPP G
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPGGLMG 601
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 572 PRPRIPPLXEG*FGXPXPXXKXPXGXXXGPXPPPPP 679
P P +P + G P P P G G PPPPP
Sbjct: 521 PPPPMPGMAPLSTGAPTPPPPPPVGMANGGPPPPPP 556
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 572 PRPRIPPLXEG*FGXPXPXXKXPXGXXXGPXPPPPP 679
P P +PP+ G P P P GP PPPPP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPP--ITGGPPPPPPP 748
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +2
Query: 578 PRIPPLXEG*FGXPXPXXKXPXGXXXGPXPPPPP 679
P PP G G P P P G G PPPPP
Sbjct: 758 PPPPPPPPG--GCPPPPPPPPPGGFKGGPPPPPP 789
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 617 PXPXXKXPXGXXXGPXPPPPP 679
P P P G GP PPPPP
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 572 PRPRIPPLXEG*FGXPXPXXKXPXGXXXGPXPPPPP 679
P P +PP+ G P P P GP PPPPP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPP--ITGGPPPPPPP 748
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +2
Query: 578 PRIPPLXEG*FGXPXPXXKXPXGXXXGPXPPPPP 679
P PP G G P P P G G PPPPP
Sbjct: 758 PPPPPPPPG--GCPPPPPPPPPGGFKGGPPPPPP 789
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 617 PXPXXKXPXGXXXGPXPPPPP 679
P P P G GP PPPPP
Sbjct: 770 PPPPPPPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 572 PRPRIPPLXEG*FGXPXPXXKXPXGXXXGPXPPPPP 679
P P +PP+ G P P P GP PPPPP
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPP--ITGGPPPPPPP 331
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +2
Query: 578 PRIPPLXEG*FGXPXPXXKXPXGXXXGPXPPPPP 679
P PP G G P P P G G PPPPP
Sbjct: 341 PPPPPPPPG--GCPPPPPPPPPGGFKGGPPPPPP 372
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 617 PXPXXKXPXGXXXGPXPPPPP 679
P P P G GP PPPPP
Sbjct: 353 PPPPPPPPGGFKGGPPPPPPP 373
>AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family
protein 31 protein.
Length = 747
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 380 YILKLTSRLNNTSIYGVRFKDHFPIALAEPRTSIAGPALTMP 255
++L L+ L S Y + K HFP TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 572 PRPRIPPLXEG*FGXPXPXXKXPXGXXXGPXPPPPP 679
P PR P G + P P G PPPPP
Sbjct: 351 PPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 386
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 572 PRPRIPPLXEG*FGXPXPXXKXPXGXXXGPXPPPPP 679
P PR P G + P P G PPPPP
Sbjct: 361 PPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 396
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 611 GXPXPXXKXPXGXXXGPXPPPPP 679
G P P P G P PPPPP
Sbjct: 232 GAPPPPPLPPVGAGAPPPPPPPP 254
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 611 GXPXPXXKXPXGXXXGPXPPPPP 679
G P P P G P PPPPP
Sbjct: 218 GAPPPPPLPPVGAGAPPPPPPPP 240
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 611 GXPXPXXKXPXGXXXGPXPPPPP 679
G P P P G P PPPPP
Sbjct: 218 GAPPPPPLPPVGAGAPPPPPPPP 240
>AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen
protein 116 protein.
Length = 313
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +2
Query: 572 PRPRIPPLXEG*FGXPXPXXKXPXGXXXGPXPPPPPXXXXG 694
P P PP EG G P P GP PP P G
Sbjct: 162 PGPNGPPGYEGQMGVPGLPGDGPTPGSPGPPGPPGPPGYPG 202
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 23.8 bits (49), Expect(2) = 9.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 661 PPPPPPXXXXGXXKK 705
PPPPPP G +K
Sbjct: 55 PPPPPPMCGCGCGRK 69
Score = 22.6 bits (46), Expect(2) = 9.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 658 APPPPPP 678
APPPPPP
Sbjct: 50 APPPPPP 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,121,017
Number of Sequences: 27780
Number of extensions: 306323
Number of successful extensions: 2078
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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