Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_O02
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.66 
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    26   6.1  

>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -1

Query: 437 RVTSESALVQLHMSLVNESQLQSSSWQTVTVLLCAREVFNTKIICHHVVQRMLNSS--RH 264
           ++ S+S L  L    + E+       ++  V  C R +  +K +CH  +   ++ +   +
Sbjct: 4   KIRSQSVLNTLETFFIKENHYDMQREESSIVNACLRYLGYSKSMCHEKMPIFMDIAFIEY 63

Query: 263 HFNHALPPTSFRS 225
            FN +L P+SF++
Sbjct: 64  CFNLSLDPSSFQN 76


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 62  NGTNNTYYCLFYTQDSLYLN 121
           +G NN Y+ L Y +D+ Y+N
Sbjct: 381 SGANNMYHSLDYPKDATYIN 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,506,003
Number of Sequences: 5004
Number of extensions: 71750
Number of successful extensions: 183
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)