Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_O01
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   8.2  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    26   8.2  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   8.2  

>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 328 DLVHH-HEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIVDLVNVVEKRQNLLLLF 170
           DL HH +  F GF VC+  ++  + + + D + L   ++ +NVV    N++ +F
Sbjct: 243 DLEHHDYRSFRGF-VCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVF 295


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 629 LERENML*LRNYQRKRTIRNVRQLFQF 709
           LE+EN+L L + QRKR  +   Q  QF
Sbjct: 266 LEKENLLLLMDDQRKRDFQPTFQRLQF 292


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 842 LERLRIYPEFHQNGKCEW 789
           L+ + I+P+  + GKC W
Sbjct: 646 LQEMHIFPQILETGKCRW 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,444,267
Number of Sequences: 5004
Number of extensions: 70415
Number of successful extensions: 209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)