Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_N22
         (969 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.15 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect(2) = 0.15
 Identities = 11/39 (28%), Positives = 14/39 (35%)
 Frame = +2

Query: 524 QRXPXQNTXTTPPXXNXPPXXPTPXXXPPPPXPPXPPXP 640
           Q+ P     +  P    P   P+P   P  P    PP P
Sbjct: 4   QKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNP 42



 Score = 23.4 bits (48), Expect(2) = 0.25
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 587 PTPXXXPPPPXPPXPP 634
           P P   PPP  PP  P
Sbjct: 40  PNPSQGPPPGGPPGAP 55



 Score = 21.8 bits (44), Expect(2) = 0.25
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +2

Query: 419 PGXXPAGPXPRPPXXAXAPXXNHPP 493
           P     GP P P     AP    PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPP 40



 Score = 21.4 bits (43), Expect(2) = 0.15
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +2

Query: 698 PXXQEAPPPXXPRXPPP 748
           P   + PPP  P   PP
Sbjct: 40  PNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 605 PPPPXPPXPP 634
           PP P PP PP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 590 TPXXXPPPPXPPXPPXP 640
           TP    PPP PP    P
Sbjct: 337 TPPKPAPPPPPPSSSGP 353


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 10/33 (30%), Positives = 10/33 (30%)
 Frame = -1

Query: 447  GXGPAGXXPGAXXSXPPPXAXXPXPXAXGNXPP 349
            G G  G  PG       P    P P   G   P
Sbjct: 967  GGGMGGCQPGGVVQSQQPIMTDPSPFKRGRYTP 999


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.141    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,965
Number of Sequences: 438
Number of extensions: 2847
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31927896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)