Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_N21
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    29   0.67 
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    28   1.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    28   2.1  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    28   2.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   3.6  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   3.6  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   4.7  

>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 125 ENLDPADDPKNIKRPCPN-FDLNCIREYFSRNSQCQLVRGPVP 250
           ++++  D+ +  K PC + F  NC++++   +  C L R  VP
Sbjct: 112 DDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 158 IKRPCPN-FDLNCIREYFSRNSQCQLVRGPVPDP 256
           I+ PC + F  NCI+ +   N  C + R PV DP
Sbjct: 410 IQLPCKHYFHENCIKPWLRVNGTCAICRAPV-DP 442


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = +2

Query: 350 IIEFYIN-----SKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLT 514
           +IE Y+N       TE +   A V   ++AS  T    +      + R D L +D     
Sbjct: 527 LIELYLNYDCISGNTENIYERAIVTLSRIASQST----SDPPPSFVFRDDQLVIDKPGF- 581

Query: 515 FTAVFPSISDL-QLSNAEVXSYVHEINPKF 601
              V+ +++D+ QL+++ + SYVH  NP +
Sbjct: 582 ---VYHTLNDIPQLNSSTIGSYVHSHNPPY 608


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 194 CSSSRSSDRVF*CFLGHRPDPSSLQKQQQKRS 99
           C S + +D +  C+    P P++LQKQQQ  S
Sbjct: 571 CDSEKENDDLE-CYFRTPPKPTTLQKQQQSPS 601


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 512 LEFHSQLPMRHFLQLALWLSYC 447
           LEF+S L  RHF+ L L   +C
Sbjct: 199 LEFNSWLVFRHFVDLILMCDFC 220


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 101 IASAVAFGENLDPADDPKNIKRPCPNF 181
           I S  A+GE L   D   NI+ P P+F
Sbjct: 23  INSNYAYGEQLQSNDQYNNIQHPAPSF 49


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = +2

Query: 170 CPNFDLNCIREYFSRNSQCQLVRGPVPDPLPLSYYRVXIPNSNLTVXYHDVKTRGFDT-I 346
           CPN  +  I           + RGP  + L   + +  +   NL     D      D  +
Sbjct: 129 CPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIK-DVNWENLDYLIVDTPPGTSDEHL 187

Query: 347 KIIEFYINSKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIV 475
            +++F+ NS  +  V+    Q + L   +    + RKA  PI+
Sbjct: 188 SLVQFFKNSGIDGAVVVTTPQEVALQDVRKEIDFCRKASIPIL 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,707
Number of Sequences: 5004
Number of extensions: 58715
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)