Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_N18
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.18 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.31 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.96 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
 Frame = +3

Query: 690 PPFLPXXKXGRLSPXPHP-AXISXSGXXSVPSPPGXVXHXPPXFTPXPXPXTPQITXXXP 866
           PP  P    GR +P   P    S +    VP+PP      PP   P   P  P       
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPM--GAPA 445

Query: 867 NPXYPPXFXXPXPHP 911
            P  PP      P P
Sbjct: 446 APPLPPSAPIAPPLP 460



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 22/76 (28%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
 Frame = +3

Query: 660 SRTCRLPHTCPPFLPXXKXGRLSPXPHPAXISXSGXXSVPSPPGXVXHXP-PXFTPXPXP 836
           SRT   P   PP LP      L P   P+ +      + P PP      P P   P   P
Sbjct: 410 SRTSTPPVPTPPSLPPSAPPSLPPSAPPS-LPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468

Query: 837 XTPQITXXXPNPXYPP 884
             P      P P   P
Sbjct: 469 LPPAAPAPPPAPAPAP 484


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 24/78 (30%), Positives = 28/78 (35%)
 Frame = +3

Query: 678  PHTCPPFLPXXKXGRLSPXPHPAXISXSGXXSVPSPPGXVXHXPPXFTPXPXPXTPQITX 857
            P   P   P      ++  P PA    SG   VP P   V   PP   P   P  P+ + 
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAP--SSGIPPVPKPAAGVPPVPP---PSEAPPVPKPSV 1205

Query: 858  XXPNPXYPPXFXXPXPHP 911
              P P  PP    P P P
Sbjct: 1206 GVP-PVPPPSTAPPVPTP 1222



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 24/88 (27%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
 Frame = +3

Query: 675  LPHTCPPFLPXXKXGRLSPXPHPAXISX-------SGXXSVPSPPGXVXHXPPXFTPXPX 833
            +P + PP          +P P PA  S        SG   VP+P G      P     P 
Sbjct: 1045 IPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPV 1104

Query: 834  PXTPQITXXXPNPXYPPXFXXPXPHPLV 917
            P         P P   P    P P P V
Sbjct: 1105 PKPSVAVPPVPAPSGAP----PVPKPSV 1128


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +3

Query: 771 SVPSPPGXVXHXPPXFTPXPXPXTPQITXXXPNPXYPPXFXXPXPHP 911
           S P PP  V    P   P P P    I    P P  PP      P P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
 Frame = +3

Query: 678  PHTCPPFLPXXKXGRLSPXPHPAXISXSGXXSVPSPPGXVXHXPPXFTPXPXP-XTPQIT 854
            P   PP  P      + P       +     S P+PP  V   PP     P P   P + 
Sbjct: 1444 PQVVPP-APMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVA 1502

Query: 855  XXXPNPXYP 881
               P+   P
Sbjct: 1503 QQPPSSVAP 1511


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
 Frame = +3

Query: 678 PHTCPPFLPXXKXGRLSPXPHPAXISX--SGXXSVPSPPGXVXHXPPXFTPXPXPXTPQI 851
           P + PP +P       S  P PA  +       S PS P  V   PP   P P    P  
Sbjct: 154 PASAPP-IPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVA 212

Query: 852 -TXXXPNPXYPPXFXXP 899
            T   P+   PP    P
Sbjct: 213 NTSSRPSSFAPPAGHAP 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,403
Number of Sequences: 5004
Number of extensions: 50755
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)