Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_N17
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   5.0  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   6.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 632 PXXPXRGGXXPPTXXXXLXXXXPPPPKXP 718
           P  P  GG  PP     +    PPPP  P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 24/107 (22%), Positives = 26/107 (24%), Gaps = 2/107 (1%)
 Frame = +2

Query: 626 PXPXXPXRGGXXPPTXXXXLXXXXPP--PPKXPXKKXXXXGKXXDPXALXXXPPXXXPKT 799
           P P    R    PP     +     P  PP     +         P      PP   P  
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA 435

Query: 800 XXPPXXXXXXXFXPPLRXXXXXLXPPPXXXXXXPPXXXXXXXXPPXP 940
             PP         PPL        P P      PP        PP P
Sbjct: 436 --PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 518  FAYNVLKTKTYKQFARLQLISQTLFSRVYFD--NKLEAGSSIALQFDVDEVKAQSSSGD 348
            F +N      YK   R+      + + + FD  N+L++G+  A+ +D+  +++  S  D
Sbjct: 1912 FVFNCDNAFNYKTIQRILSGLAQIGTYICFDEFNRLDSGTLSAISYDIQRIQSLVSHSD 1970


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 554 FTLFKSLIKISKFAYNVLKTKTYKQFARLQLISQTLFSRV 435
           F L ++L++ +K+  + +  K Y    RL ++  TL+ R+
Sbjct: 11  FVLNRNLLEANKYKLSEITFKVYISIRRLLIVVITLYRRI 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,645
Number of Sequences: 5004
Number of extensions: 47761
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)