Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_N12
(980 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 107 2e-24
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 107 2e-24
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 64 4e-11
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.33
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.33
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.76
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 1.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.3
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 2.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.3
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 27 5.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.1
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 9.3
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 9.3
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 107 bits (258), Expect = 2e-24
Identities = 51/109 (46%), Positives = 67/109 (61%)
Frame = +1
Query: 67 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 246
MK+ +C++SG K+YPG G+ V+ D K F F+N K E+ L R+NPR+++WTVLYRR K
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60
Query: 247 KGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAI 393
KG EE IVGA+L I KRN +PEVR A R A+
Sbjct: 61 KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAAL 109
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 107 bits (258), Expect = 2e-24
Identities = 51/109 (46%), Positives = 67/109 (61%)
Frame = +1
Query: 67 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 246
MK+ +C++SG K+YPG G+ V+ D K F F+N K E+ L R+NPR+++WTVLYRR K
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60
Query: 247 KGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAI 393
KG EE IVGA+L I KRN +PEVR A R A+
Sbjct: 61 KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAAL 109
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 63.7 bits (148), Expect = 4e-11
Identities = 27/61 (44%), Positives = 34/61 (55%)
Frame = +1
Query: 67 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 246
M++ C + +YPGHG V+ D K F F SKC M+RNPRKV WT YR+
Sbjct: 1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHG 60
Query: 247 K 249
K
Sbjct: 61 K 61
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.33
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 556 PPXPPPXXPXPPPPXPXPPXP 618
PP PPP PP P PP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 29.9 bits (64), Expect = 0.57
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 556 PPXPPPXXPXPPPPXPXPPXP 618
PP PPP PP P PP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Frame = +1
Query: 556 PPXPPPXXPXPP---PPXPXPPXP 618
PP PP P PP PP PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 568 PPXXPXPPPPXPXPPXPRXXP 630
PP P PPPP P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPP 25
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.33
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 556 PPXPPPXXPXPPPPXPXPPXP 618
PP PPP PP P PP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Frame = +1
Query: 556 PPXPPP---XXPXPPPPXPXPP 612
PP PPP PPPP P PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Frame = +1
Query: 556 PPXPPPXXPXPPPPXP-----XPPXPRXXP 630
PP P P PPPP P PP P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 559 PXPPPXXPXPPPPXPXP 609
P P P PPPP P P
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.76
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 611 GGXGXGGGGXGXXGGGXGG 555
GG G GGG G GGG GG
Sbjct: 235 GGPGGFGGGPGGFGGGLGG 253
Score = 29.5 bits (63), Expect = 0.76
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 611 GGXGXGGGGXGXXGGGXGG 555
GG G GGG G GGG GG
Sbjct: 242 GGPGGFGGGLGGFGGGPGG 260
Score = 29.5 bits (63), Expect = 0.76
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 611 GGXGXGGGGXGXXGGGXGG 555
GG G GGG G GGG GG
Sbjct: 249 GGLGGFGGGPGGFGGGPGG 267
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 602 GXGGGGXGXXGGGXGG 555
G GGG G GGG GG
Sbjct: 184 GHNGGGFGGFGGGSGG 199
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 559 PXPPPXXPXPPPPXPXPPXPRXXP 630
P PPP PPP PP P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 556 PPXPPPXXPXPPPPXPXPPXPRXXP 630
PP PP P PP P P P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 556 PPXPPPXXPXPPPPXPXPPXP 618
PP P P PP P PP P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 629 GXXRGXGGXGXGGGGXGXXGGGXGGS 552
G G GG G GG G GG GG+
Sbjct: 42 GARGGRGGRGGARGGRGGSSGGRGGA 67
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 629 GXXRGXGGXGXGGGGXGXXGGGXGGS 552
G GG G GG G GGG GG+
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGA 35
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 632 KGXXRGXGGXGXGGGGXGXXGGGXGGS 552
+G G G G GGG G GGG GG+
Sbjct: 18 RGGFNGGRG-GFGGGRGGARGGGRGGA 43
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 632 KGXXRGX--GGXGXGGGGXGXXGGGXGG 555
+G RG GG G GG G GG GG
Sbjct: 36 RGGGRGGARGGRGGRGGARGGRGGSSGG 63
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 556 PPXPPPXXPXPPPPXPXPPXP 618
PP PP PP P P P P
Sbjct: 467 PPLPPAAPAPPPAPAPAPAAP 487
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.0 bits (47), Expect(2) = 2.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 586 PPPPXPXPP 612
PPPP P PP
Sbjct: 945 PPPPPPPPP 953
Score = 22.6 bits (46), Expect(2) = 2.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 580 PXPPPPXPXP 609
P PPPP P P
Sbjct: 905 PTPPPPPPLP 914
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +1
Query: 556 PPXPPPXXPXPPPPXP--XPPXPRXXP 630
PP P P PPP P PP P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAP 165
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +1
Query: 559 PXPPPXXPXPPPPXPXPP 612
P PPP P P P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 783 PPXTPRHSPXFTXHQLXSXXPP 848
P TP P F+ HQL S PP
Sbjct: 35 PRLTPNLPPPFSVHQLQSFVPP 56
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 736 SSGRTXPPLXRPSXXNPXXPLA 801
+SG PP+ +PS NP P+A
Sbjct: 940 ASGTRVPPVQQPSHPNPYTPVA 961
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = +1
Query: 556 PPXPPPXXPXPPPPXP--XPPXPR 621
PP P P PP P P PP P+
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPK 1125
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = +1
Query: 556 PPXPPPXXPXPPPPXP--XPPXPR 621
PP P P PP P P PP P+
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPK 1144
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = +1
Query: 556 PPXPPPXXPXPPPPXP--XPPXPR 621
PP P P PP P P PP P+
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPK 1163
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = +1
Query: 556 PPXPPP--XXPXPPPPXPXPPXPR 621
PP P P P PPP PP P+
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPK 1202
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -1
Query: 632 KGXXRGXGGXGXGGGGXGXXGGG-XGGS 552
+G G G GGG G GGG GGS
Sbjct: 151 RGGFGGNSRGGFGGGSRGGFGGGSRGGS 178
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 9.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 153 EGFSIHFNHGLAMAWIYFVSTI 88
+GF H+ G A+ W+YF + +
Sbjct: 430 DGFHKHYLPGTAIDWVYFAADV 451
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,202
Number of Sequences: 5004
Number of extensions: 40158
Number of successful extensions: 293
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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