Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_N07
         (1150 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.53 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   8.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 827 PXGXPPPLXFXPXPPYXGGPPXPKXXPFLGG 919
           P   P P+   P  P  GGPP P   P + G
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772



 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 328 PPPPPPXXXXXGGGFXPXP 384
           PPPPPP     G G  P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 870 GGXGXNXRGGGXPXGF 823
           GG G   RGGG P GF
Sbjct: 157 GGFGTRTRGGGMPGGF 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,582
Number of Sequences: 5004
Number of extensions: 20788
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 613592056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)