Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_N03
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1008 - 7987936-7988628,7988923-7989102 31 1.6
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 29 3.7
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 29 3.7
12_02_0508 + 19820288-19821031,19822612-19822860,19823166-198232... 29 4.9
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 29 6.5
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 28 8.6
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.6
09_06_0323 - 22337217-22337450,22338263-22339204 28 8.6
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 28 8.6
01_01_1201 + 9678893-9679311,9679415-9679721 28 8.6
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 720 RKRHASRREKGGQVSGKRQGSEQESARGSFQGETPG 613
R R RR GG+V+G+ + RG+++GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 734 QREL*ESATLPEGRKAD-RYPVSGRVRNRRAHEGASRGKRLVS 609
QREL AT P D R ++GR + RR + A+R +R VS
Sbjct: 32 QRELPRQATPPPRGTGDLRDQINGRRKARRTRDDANRSRRHVS 74
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 517 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRTL--PLTGYLSA 690
CWR + T D Q + +KD P + PSC L+F L PL L A
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYA 342
Query: 691 F 693
F
Sbjct: 343 F 343
>12_02_0508 +
19820288-19821031,19822612-19822860,19823166-19823288,
19826916-19827146
Length = 448
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 882 VXXASGDKSXLPGWXQDDSYRIRXSGRAERGFVHTAQLGANDLHRT 745
V A+G KS +P W +++ + G + F H+ + G N L+ T
Sbjct: 357 VIFATGYKSNVPSWLKEEEFFSESDGFPRKAFPHSWR-GKNGLYAT 401
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 641 RALSCSEPCRLPDTCPPFSLREAWRFLIAHA 733
R L+C C P CPP+S W+ ++ A
Sbjct: 466 RELNCKSICHSP-MCPPYSAMTEWQHMVLSA 495
>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 611 IPGVSPWKLPRALSCSEPCRLPDTCPPFSLREAWRFLIAHAVGI 742
+P PW LP + + C +P PP L++ + I A+ +
Sbjct: 1278 LPKRKPWPLPWSGGVTSVCLIPPWPPPIRLKQCRSWKIGVAISL 1321
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 297 NESAN---ARGEAVCVLGALPLPRSLTRCAR 380
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>09_06_0323 - 22337217-22337450,22338263-22339204
Length = 391
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 583 GGETRQDYKDTRRFPLEAPSCALLFRTLPLTGYLSAFLPSGSVALSHSSRCRY 741
GGE ++ RRF AP ALL R L ++ + A++HS+RCR+
Sbjct: 166 GGEAAREL--ARRFAA-APRRALLSRREQLRAAPASPAAMAAAAVAHSTRCRF 215
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = +2
Query: 656 SEPCRLPDTCPPFSLREAWRFLIA-----HAVGISVRCRS 760
+E RL D C P L+E WRFL+A A S RC++
Sbjct: 845 TEEERLAD-CDPRVLKEQWRFLVAFWNTEEAQAASARCKA 883
>01_01_1201 + 9678893-9679311,9679415-9679721
Length = 241
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -3
Query: 750 RTEIPTA*AMRKRHASRREKGGQVSGKRQGSEQESAR---GSFQGETPG 613
R E A + HA+RR++ G G G+ QESAR G+ + + PG
Sbjct: 11 RAEAAAHRAADELHAARRDEPGGGGGGMLGTVQESARSLLGAVRDKIPG 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,037,450
Number of Sequences: 37544
Number of extensions: 550016
Number of successful extensions: 1752
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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