Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_M24
(1007 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.7
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 494 PPXLPXPXXSPPPXPPLXXGXXXPPPHXLP 583
PP P PP PP+ G PP LP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 496 PXPPPXXXXSPXXPPXXPRXPPXPTPXPPXXLXXXP 603
P PPP P P P PP P PP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPS-APPPPLPASSAP 1741
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 496 PXPPPXXXXSPXXPPXXPRXPPXPTPXPPXXL 591
P PPP P PP P P P PP L
Sbjct: 1705 PTPPPPPMSVP-PPPSAPPMPAGPPSAPPPPL 1735
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 496 PXPPPXXXXSPXXPPXXPRXPPXPTPXP 579
P P +P PP P PP P P P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 493 PPXPPPXXXXSPXXPPXXPRXPPXPTPXPP 582
PP PPP + P P+ P P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Frame = +1
Query: 496 PXPPPXXXXSPXXPPXXPRXP-PXPTPXP 579
P PP P PP P P P P P P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +1
Query: 493 PPXPPPXXXXSPXXPPXXPRXPPXPTPXP 579
PP P +P PP P PP P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Frame = +1
Query: 496 PXPPPXXXXSPXXPPXXPRXPPXP--TPXPP 582
P PP +P P P PP P P PP
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 494 PPXLPXPXXSPPPXPPLXXGXXXPPPHXLP 583
PP P PPP PP PPP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 7/51 (13%)
Frame = +1
Query: 493 PPXPPPXXXXSPXXPPXXPRXP-------PXPTPXPPXXLXXXPXTXPXTP 624
PP PPP P P P P P P PP P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 493 PPXPPPXXXXSPXXPPXXPRXPP 561
PP PPP + PP P PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = +1
Query: 493 PPXPPPXXXXSPXXPPXXPRX-PPXPTPXPPXXLXXXPXTXPXTPXTXXXPXXTXSP 660
PP P SP P P PP P PP L P + + P +P
Sbjct: 173 PPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAP 229
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +1
Query: 493 PPXPPPXXXXSPXXPPXXPRXPPXPTPXPPXXLXXXPXTXP 615
P PPP +P P + PP P+ PP P P
Sbjct: 147 PSIPPPSPASAPPIPS---KAPPIPSSLPPPAQPAAPVKSP 184
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 4.2
Identities = 15/55 (27%), Positives = 19/55 (34%)
Frame = +1
Query: 493 PPXPPPXXXXSPXXPPXXPRXPPXPTPXPPXXLXXXPXTXPXTPXTXXXPXXTXS 657
PP P P P P + PP P P P + +P + P T S
Sbjct: 1217 PPVPTPSAGLPPVPVPTA-KAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSS 1270
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/63 (23%), Positives = 20/63 (31%)
Frame = +2
Query: 497 PXLPXPXXSPPPXPPLXXGXXXPPPHXLPXXFXXNXXLXHXPXKXXXXXXEXLPXPNSPX 676
P +P P +PP P PPP P + L P P +P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPS 1248
Query: 677 LPT 685
+ T
Sbjct: 1249 VST 1251
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +1
Query: 493 PPXPPPXXXXSPXXPPXXPRXPPXPTPXPPXXLXXXPXTXPXTP 624
P PP S PP P P P P L P P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 493 PPXPPPXXXXSPXXPPXXPRXPP 561
PP PPP P PP P PP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP--PP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,196
Number of Sequences: 5004
Number of extensions: 27637
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 523262732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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