Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_M23
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 598 PXPPPPXXXSPGP 636
           P PPPP   S GP
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 586 PXXPPXPPPPXXXSPGPA 639
           P   P PPPP    P  A
Sbjct: 339 PKPAPPPPPPSSSGPDSA 356


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/42 (26%), Positives = 11/42 (26%)
 Frame = +3

Query: 708 PPHXQXPXPXXPXXPQXGGXPPXXXXXPXXPPQTXSPPXXXP 833
           PP    P P  P      G PP        P     P    P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGP 451


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 671 GGPLTXHXGGXAGPGEXXXGGGGXGG 594
           GG +T   GG    G    GGGG  G
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGGLG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,579
Number of Sequences: 438
Number of extensions: 4924
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)