Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_M21
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.099
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.23 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.40 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   1.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.1  
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    27   2.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.6  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.3 bits (70), Expect = 0.099
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = +3

Query: 759  PLXAPXPDPGLSXXKRXXPXPXXXXXPXPPXPXXKPPNPXPPXX-PXIPPP 908
            P  A  P P  S      P P     P PP P   PP P P    P +PPP
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPP-PSEAPPVPKPSVGVPPVPPP 1213



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 17/48 (35%), Positives = 18/48 (37%)
 Frame = +3

Query: 759  PLXAPXPDPGLSXXKRXXPXPXXXXXPXPPXPXXKPPNPXPPXXPXIP 902
            PL    P P LS      P P     P P  P   PP P P   P +P
Sbjct: 1007 PLARVPPVPKLSSKAPPVPLPSADAPPIP-VPSTAPPVPIPTSTPPVP 1053



 Score = 30.3 bits (65), Expect = 0.40
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
 Frame = +3

Query: 732  VPGGVLXXXPLXAPX---PDPGLSXXKRXXPXPXXXXXPXPPXPXXKPPNPXPPXXPXIP 902
            VP   +   P+ AP    P P  S      P P     P P      PP P P   P +P
Sbjct: 1142 VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201

Query: 903  PP 908
             P
Sbjct: 1202 KP 1203



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
 Frame = +3

Query: 732  VPGGVLXXXPLXAPXPDPGLSXXK-RXXPXPXXXXXPXPPXPXXK-PPNPXPPXXPXIPP 905
            VP   +   P+ AP   P +        P P     P  P P    PP P P   P +P 
Sbjct: 1104 VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK 1163

Query: 906  P 908
            P
Sbjct: 1164 P 1164



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/47 (29%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
 Frame = +3

Query: 771  PXPDPGLSXXKRXXPXPXXXXX-PXPPXPXXKPPNPXPPXXPXIPPP 908
            P P           P P      P  P P   PP P P   P +P P
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +3

Query: 813  PXPXXXXXPXPPXPXXKPPNPXPPXXPXIPPP 908
            P P     P P      PP P P   P +P P
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
 Frame = +3

Query: 813  PXPXXXXXPXPPXPXXKPPNP-XPPXXPXIPPPXP 914
            P P     P  P P   PP P      P  PPP P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = +3

Query: 771  PXPDPGLSXXKRXXPXPXXXXXPXPPXPXXK-PPNPXPPXXPXIPPP 908
            P P P ++      P P     P  P P    PP P P   P +P P
Sbjct: 1103 PVPKPSVAVP----PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
 Frame = +3

Query: 738  GGVLXXXPLXAPXPDP-GLSXXKRXXPXPXXXXXPXPPXPXXKPPNPXPPXXPXIPPPXP 914
            GG+    P+  P   P   +  +   P P       PP P   P    PP  P  PPP P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP--PPPLP 1736


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 16/51 (31%), Positives = 17/51 (33%)
 Frame = +3

Query: 762 LXAPXPDPGLSXXKRXXPXPXXXXXPXPPXPXXKPPNPXPPXXPXIPPPXP 914
           L +P P P         P P     P P      PP P P      PPP P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = +3

Query: 735 PGGVLXXXPLXAPXPDPGLSXXKRXXPXPXXXXXPXPPXPXXKPPNPXPPXXPXI 899
           P  V+   P  AP P P  +      P P     P PP      P P PP  P +
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPP-----PPPPGVAGAGPPPPPPPPPAV 785


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 240 INYLF-YILHPRIRNEHTQIALTLTTNILID 151
           INYL   IL+P+ RNE      +LTT I +D
Sbjct: 658 INYLISLILYPKARNESWTNTESLTTGITVD 688


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 819 PXXXXXPXPPXPXXKPPNPXPPXXP 893
           P     P PP P  +PP+  PP  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 837 PXPPXPXXKPPNPXPPXXPXIPPP 908
           P  P P   PP   PP  P  PPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 171 LMSVLFVCVHCEFEGEE 221
           +M++++VCVHC F  EE
Sbjct: 96  MMTLIYVCVHCGFAFEE 112


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/52 (28%), Positives = 15/52 (28%)
 Frame = +3

Query: 759 PLXAPXPDPGLSXXKRXXPXPXXXXXPXPPXPXXKPPNPXPPXXPXIPPPXP 914
           P   P   P L       P         PP P   P  P  P     PPP P
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
 Frame = +3

Query: 837 PXPPX-PXXKPPNPXPPXXPXIPPPXP 914
           P PP  P  +PP   P      PPP P
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIP 257



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 837 PXPPXPXXKPPNPXPPXXPXIPPPXP 914
           P  P P   PP+  P   P  PP  P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLP 440


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/76 (23%), Positives = 21/76 (27%)
 Frame = +3

Query: 687 PCSXTVTMSPXXXWXVPGGVLXXXPLXAPXPDPGLSXXKRXXPXPXXXXXPXPPXPXXKP 866
           P S     +P      P        +  P P        +  P P     P  P    K 
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183

Query: 867 PNPXPPXXPXIPPPXP 914
           P P  P  P   PP P
Sbjct: 184 P-PSAPSLPSAVPPMP 198


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 258 YSCRLLINYLFYILHPRIRNEHTQIALTLTTNILI 154
           Y C+ L+N + Y+++P IR + T   L L   +L+
Sbjct: 13  YYCKRLLNSVTYMMYPLIR-KRTMKKLLLIVGLLL 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,668
Number of Sequences: 5004
Number of extensions: 60974
Number of successful extensions: 283
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)