Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_M13
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0030 + 3115502-3115750,3115835-3116104,3116193-3116633,311...    29   4.9  
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    28   8.5  

>09_02_0030 +
           3115502-3115750,3115835-3116104,3116193-3116633,
           3116697-3116783,3116872-3116973,3117532-3117631,
           3117791-3117807
          Length = 421

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 336 VLHNVNGHGLSLTGTRXPGFGEQLGVXGXVNLFH 437
           V+H   GH   + G R  G G+QL   G  NL H
Sbjct: 215 VVHIYRGHEDEVCGLRWSGSGQQLASGGNDNLVH 248


>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -1

Query: 379 VPVRLSPCPFTLCRTSPXGGGAELVA----VVELGGPDG 275
           VP RL P PF L  +SP  GG+ LVA     V  GG +G
Sbjct: 18  VPSRL-PRPFLLSLSSPSRGGSGLVAASASAVAAGGSEG 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,663,144
Number of Sequences: 37544
Number of extensions: 358862
Number of successful extensions: 844
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)