Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_M11
         (1100 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.29 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 18/68 (26%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
 Frame = +3

Query: 423  PXHTNPPXXXXPXXQXXXXXXXPXPXPXPXPXKAXXAQPP-PXAPPXXPXPPXHXEXXPX 599
            P H        P          P P P P       + PP P  PP  P PP      P 
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742

Query: 600  XXXPRXRT 623
               P  R+
Sbjct: 1743 VPNPGDRS 1750



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/59 (27%), Positives = 16/59 (27%)
 Frame = +3

Query: 399  PGXTXQXXPXHTNPPXXXXPXXQXXXXXXXPXPXPXPXPXKAXXAQPPPXAPPXXPXPP 575
            P  T    P    PP    P          P P   P P     A PPP      P  P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
 Frame = +3

Query: 489 PXPXPXPXPXKAXXAQPPPXAPP----XXPXPP 575
           P P P P P       PPP  PP      P PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 495 PXPXPXPXKAXXAQPPPXAPP 557
           P P P P  A    PPP  PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 495 PXPXPXPXKAXXAQPPPXAPP 557
           P P P P     A PPP  PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 495 PXPXPXPXKAXXAQPPPXAPP 557
           P P P P     +QPPP  PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
 Frame = +3

Query: 489 PXPXPXPXPXKAXXAQPPPXAP----PXXPXPPXHXEXXPXXXXP--RXRTXXXXXXXRR 650
           P P P P P     + PP   P    P    P  +    P    P  R          +R
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKR 310

Query: 651 XPPXXXPXGRXR 686
            PP   P  R R
Sbjct: 311 PPPPPPPSRRNR 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,841
Number of Sequences: 5004
Number of extensions: 10043
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 581717144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)