Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_M10
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc... 145 7e-36
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc... 143 3e-35
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 28 2.1
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 27 2.8
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.8
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 27 3.7
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 27 3.7
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 26 6.5
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 26 8.6
>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
L30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 145 bits (352), Expect = 7e-36
Identities = 67/109 (61%), Positives = 80/109 (73%)
Frame = +3
Query: 99 TLPKWLQQRNRKRPSSQLTPALPXVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 278
T P + K+ + L MKSGKY LGYK TLKTLR GKAKL++IA NAPPLR
Sbjct: 7 TAPVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLR 66
Query: 279 KSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 425
KSE+EYYA+L++ VHHYSGNNI+LGTACGK +RV LA+ D GDSDI+
Sbjct: 67 KSELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115
>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
L30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 143 bits (347), Expect = 3e-35
Identities = 65/101 (64%), Positives = 77/101 (76%)
Frame = +3
Query: 123 RNRKRPSSQLTPALPXVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYA 302
+ K+ + L MKSGKY LGYK TLKTLR GKAKL++IA N PPLRKSE+EYYA
Sbjct: 7 KKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYA 66
Query: 303 LLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 425
+L+K VHHY+G NI+LGTACGK +RV LAITD GDSDI+
Sbjct: 67 MLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 234 KAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACG 368
++ +VI++K P+RK I+ + L+ GVH ++ EL CG
Sbjct: 87 RSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFL--DSPELANQCG 129
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 220 VFKVCLYPKQYFPDFITQGKAGVN 149
+ C+YPK+Y D + Q +A +N
Sbjct: 154 LLSACVYPKEYEHDLLLQSQARIN 177
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 711 YXRXIXVTNKAIASPISPIKHFF 643
Y + I +T K +ASP +P+KH F
Sbjct: 227 YDKSINITKK-VASPFTPVKHTF 248
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 174 MKSGKYCLGYKQTLKTLRQGKAKLVI 251
+ SGKYC G T+ L++G + ++
Sbjct: 293 LDSGKYCFGVVDTMNALQEGAVETLL 318
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 122 KKQKKTIESINSRLALXDEIGKILLRIQANFENSSTRQSKAG 247
KK++ ES+N LA+ E+ + I+A F + +++AG
Sbjct: 605 KKEENVSESLNEWLAIASELIDEFVSIKAFFPSEKKARARAG 646
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 132 KRPSSQLTPALPXVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 275
K+ + ++ + K G K+ +K +R+G+ LVI+A + P+
Sbjct: 35 KKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPM 82
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 90 LAFTLPKWLQQRNRKRPSSQLTPALPXVMKSGKY 191
L ++L +WL N K PS+Q + L K ++
Sbjct: 129 LGYSLIEWLNPMNLKEPSNQESDTLSLTEKFSRF 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,371
Number of Sequences: 5004
Number of extensions: 41319
Number of successful extensions: 83
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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