Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_M08
         (1075 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.64 

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 16/44 (36%), Positives = 16/44 (36%)
 Frame = +1

Query: 745 PXXPXXXPXXPXXASPXPXSXPXXXXXAPXPXSXXPPXXSXLPP 876
           P  P      P  A P P   P     AP   S  PP  S LPP
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +1

Query: 745 PXXPXXXPXXPXXASPXPXSXPXXXXXAPXPXSXXPPXXSXLPPXPP 885
           P  P   P  P  A P P   P      P P     P  S  PP  P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS--PPSAP 188



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
 Frame = +1

Query: 754 PXXXPXXPXXASPXPXSXPXXXXXA-PXPXSXXPPXXSXLPPXPP 885
           P   P  P    P P S P     A P P S  PP     P   P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,085,096
Number of Sequences: 5004
Number of extensions: 7805
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 563787506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)