Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_M08
         (1075 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    31   1.9  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   7.5  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   7.5  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    28   10.0 
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   10.0 
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   10.0 
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    28   10.0 
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    28   10.0 

>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +2

Query: 902  PXPYSXXLHLIPXPXXSRPXPXLXRXTXPXPXSXXPSPPLHSXXXXPSXFLPLPXP 1069
            P P      L P P    P P + +     P    P PPL S    PS  LP P P
Sbjct: 1343 PPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFS----PSMILPPPPP 1394


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +1

Query: 766 PXXPXXASPXPXSXPXXXXXAPXPXSXXPPXXSXLPPXPP 885
           P  P   +P P   P      P P    PP    +PP PP
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPPP-PSRFGPPGMGGMPPPPP 338


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +1

Query: 766 PXXPXXASPXPXSXPXXXXXAPXPXSXXPPXXSXLPPXPP 885
           P  P   +P P   P      P P    PP    +PP PP
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPPP-PSRFGPPGMGGMPPPPP 348


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
 Frame = +1

Query: 745 PXXPXXXPXXPXXA-SPXPXSXPXXXXXAPXPXSXXPP--XXSXLPPXPP 885
           P  P   P  P    +P P   P     +P P    PP    S +PP PP
Sbjct: 460 PTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPP 509


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +1

Query: 766 PXXPXXASPXPXSXPXXXXXAPXPXSXXPPXXSXLPPXPP 885
           P  P    P P   P     +P P +      S +PP PP
Sbjct: 157 PRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPP 196


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
 Frame = +1

Query: 754 PXXXPXXPXXAS-PXPXSXPXXXXXAPXPXSXXPPXXSXLPPXPP 885
           P   P  P  A  P P   P      P P    PP     PP PP
Sbjct: 33  PMCQPRMPCAAPMPMPMPMPVCPPPPPCPAQFCPPPPICPPPPPP 77


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
 Frame = +1

Query: 745 PXXPXXXPXXPXXA-SPXPXSXPXXXXXAPXPXSXXPP--XXSXLPPXPP 885
           P  P   P  P    +P P   P     +P P    PP    S +PP PP
Sbjct: 467 PTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPP 516


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 790 PXPXSXPXXXXXAPXPXSXXPPXXSXLPPXPP 885
           P P   P     AP P    PP     PP PP
Sbjct: 563 PPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPP 594


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,907,499
Number of Sequences: 27780
Number of extensions: 74110
Number of successful extensions: 277
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2877115450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)