Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_M07
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.8  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    26   7.8  

>SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 213 RRRSLKKPFTPALTGPASFNIKTAQH-KIKTEHFMVEIYKLPF 88
           R + LK+ FT  +TG  S  +KT  H KI  E +   +  LPF
Sbjct: 48  RLQILKEGFTVPMTGIISQYLKTDDHIKIVKEIYPPNLPVLPF 90


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 383 IVPTPTSAGKTTTEKEGRENFVGGCATGFK 472
           ++P    A  TT + +    FV  C TGFK
Sbjct: 323 VIPRDVQAAVTTIKAKRTIQFVDWCPTGFK 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,600
Number of Sequences: 5004
Number of extensions: 50271
Number of successful extensions: 138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)