Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_M06
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...   146   4e-36
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    36   0.006
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    32   0.10 
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    27   2.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   8.8  

>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score =  146 bits (354), Expect = 4e-36
 Identities = 68/93 (73%), Positives = 78/93 (83%)
 Frame = +1

Query: 268 LDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELXRNITIKXG 447
           LD+++LS + P +ISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNEL RNITIK G
Sbjct: 5   LDISELSPIHPAIISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLG 64

Query: 448 YANAKIYQCDNPKCPRPTSFISGGSSKDDSFPC 546
           YANAKIY+C N +CPRP  + S  S+K+D  PC
Sbjct: 65  YANAKIYKCSNEECPRPGCYRSYSSNKEDHPPC 97


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +1

Query: 307 ISRQATINIGTIGHVAHGKSTVVKAIS 387
           + ++  +NIGTIGHV HGK+T+  AI+
Sbjct: 48  VRKKPHVNIGTIGHVDHGKTTLTAAIT 74


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
 Frame = +1

Query: 232  TQSNLHQQDLSKLDVTKLSALSPEVISRQATINIGT-IGHVAHGKSTVVKAISGVQTVRF 408
            T +++H Q L++ ++ K SA++    S ++       I   A+GK+ ++ A    Q + +
Sbjct: 825  TMTDVHDQKLAERELQKQSAIAANENSYRSLAEASPQIVFAANGKNGIIYA--NAQWLSY 882

Query: 409  KNELXRNITIKXGYANAKIYQCDNPKCPRPTSFISGGSSKDDS 537
               L    ++  G+ +A +Y  D  KC  P S     +++D+S
Sbjct: 883  SG-LSLESSLGLGFLSA-VYHADRKKCLLPESLEGTFNNQDES 923


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 343 GHVAHGKSTVVKAISGVQT 399
           GH++HG ST  KAIS V T
Sbjct: 139 GHLSHGFSTPQKAISAVST 157


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 292  LSPEVISRQATINIGTIGHVAHGKSTVVKAIS-GVQTVRFKNELXRNITIK 441
            L P ++S++ T+N  ++    H    VVK  + GV  V++   L + +TI+
Sbjct: 2568 LYPSILSQEDTMNDNSLLPTFHSMVAVVKNDTYGVTYVKYATILLQELTIE 2618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,911
Number of Sequences: 5004
Number of extensions: 54646
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)