Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_M06
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-9|AAK39619.1|  469|Caenorhabditis elegans Hypothetical ...   154   8e-38
U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation f...    38   0.010
AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial...    38   0.010
D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation fact...    36   0.056
D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation fact...    36   0.056
AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongatio...    36   0.056
U41109-11|AAB37037.2|  204|Caenorhabditis elegans Hypothetical p...    33   0.39 
Z99709-7|CAB16862.2|  500|Caenorhabditis elegans Hypothetical pr...    29   6.4  
Z99709-6|CAB16863.1|  459|Caenorhabditis elegans Hypothetical pr...    29   6.4  

>AC025716-9|AAK39619.1|  469|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.8 protein.
          Length = 469

 Score =  154 bits (374), Expect = 8e-38
 Identities = 79/117 (67%), Positives = 88/117 (75%), Gaps = 1/117 (0%)
 Frame = +1

Query: 208 MASN-EGRTTQSNLHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAI 384
           MAS  E    QS L +QDL K+ V  L+ L+ EVISRQATINIGTIGHVAHGKST+VKA 
Sbjct: 1   MASEAEKDKCQSWLAKQDLDKVGVDNLNPLTEEVISRQATINIGTIGHVAHGKSTLVKAF 60

Query: 385 SGVQTVRFKNELXRNITIKXGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRA 555
           SGV TV+FK EL RNITIK GYANAKIY+C N +CPRP  + S GSS  D FPC RA
Sbjct: 61  SGVHTVKFKRELERNITIKLGYANAKIYRCSNQECPRPGCYRSAGSSTPDRFPCERA 117


>U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 2 protein.
          Length = 439

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +1

Query: 325 INIGTIGHVAHGKSTVVKAISGVQ 396
           +N+GTIGH+ HGK+T+  AI+ VQ
Sbjct: 46  VNVGTIGHIDHGKTTLTSAITRVQ 69


>AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial
           elongation factorTu homologue protein.
          Length = 439

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +1

Query: 325 INIGTIGHVAHGKSTVVKAISGVQ 396
           +N+GTIGH+ HGK+T+  AI+ VQ
Sbjct: 46  VNVGTIGHIDHGKTTLTSAITRVQ 69


>D38472-1|BAA07492.1|  495|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 495

 Score = 35.5 bits (78), Expect = 0.056
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +1

Query: 325 INIGTIGHVAHGKSTVVKAISGV 393
           +N+GTIGHV HGK+T+  AI+ +
Sbjct: 50  LNVGTIGHVDHGKTTLTSAITKI 72


>D38471-1|BAA07491.1|  496|Caenorhabditis elegans elongation factor
           Tu homologueprecursor protein.
          Length = 496

 Score = 35.5 bits (78), Expect = 0.056
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +1

Query: 325 INIGTIGHVAHGKSTVVKAISGV 393
           +N+GTIGHV HGK+T+  AI+ +
Sbjct: 51  LNVGTIGHVDHGKTTLTSAITKI 73


>AC024859-25|AAK29979.1|  496|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 1 protein.
          Length = 496

 Score = 35.5 bits (78), Expect = 0.056
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +1

Query: 325 INIGTIGHVAHGKSTVVKAISGV 393
           +N+GTIGHV HGK+T+  AI+ +
Sbjct: 51  LNVGTIGHVDHGKTTLTSAITKI 73


>U41109-11|AAB37037.2|  204|Caenorhabditis elegans Hypothetical
           protein F52E1.2 protein.
          Length = 204

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 572 FPTSSPSELLXHCPASPPPXWQLLXXRCXPVMDAXIT 682
           F    P  +L  CP   P  WQ L  +C    DA +T
Sbjct: 50  FTIVDPGAMLIDCPGGCPTGWQYLNSKCYKKFDAAVT 86


>Z99709-7|CAB16862.2|  500|Caenorhabditis elegans Hypothetical
           protein C47B2.7b protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 298 PEVISRQATINIGTIGHVAHGKSTVVKAIS 387
           P   S    +N+G +GHV  GK+T+ + I+
Sbjct: 5   PSTSSSVGPLNLGILGHVDSGKTTLTRRIA 34


>Z99709-6|CAB16863.1|  459|Caenorhabditis elegans Hypothetical
           protein C47B2.7a protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 298 PEVISRQATINIGTIGHVAHGKSTVVKAIS 387
           P   S    +N+G +GHV  GK+T+ + I+
Sbjct: 5   PSTSSSVGPLNLGILGHVDSGKTTLTRRIA 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,454,011
Number of Sequences: 27780
Number of extensions: 323279
Number of successful extensions: 736
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)