Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_M05
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   3.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 29/126 (23%), Positives = 47/126 (37%)
 Frame = -1

Query: 524 TGCTDTILVPWSTVPLRTLXFTIPSQFTPRYXHGPAPAPARKXGSRFKCSSXLARSYILS 345
           T CT +  VP+++ P+ +  +TI S  TP     P         +    +S    S  L+
Sbjct: 494 TNCTTSTSVPYTSTPVTSSNYTISSS-TP-VTSTPVTTTNCTTSTSVLYTSTPVTSTPLA 551

Query: 344 RLTCGTKYGGPPXSTSLASPVNPGDLR**GGSVRYGLSATDTSTNLKFVXKPFDNTQATS 165
              C T    P  ST + S            S     +   TST++ +   P  +  +TS
Sbjct: 552 TTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTS 611

Query: 164 SKRRSI 147
           S    +
Sbjct: 612 SSSTQV 617



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 530 ARTGCTDTILVPWSTVPLRTLXFTIPSQFTP 438
           A T CT +  VP+++ P+ +  +TI S  TP
Sbjct: 551 ATTNCTTSTSVPYTSTPVTSSNYTISSS-TP 580


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 223 SVADSPYLTEPPYYLKS 273
           +V D PY+ EPP YL+S
Sbjct: 511 TVTDYPYIEEPPEYLES 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,504
Number of Sequences: 5004
Number of extensions: 52420
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)