Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_M02
         (956 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    28   0.093
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   4.6  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 28.3 bits (60), Expect = 0.093
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 687 GXPPPXAGGPPXXXXPPXRPPPPXXXP 767
           G PP   GGPP    PP   P P   P
Sbjct: 59  GIPPHHYGGPPSGGQPPQGMPYPRFPP 85


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 811 PPPPPPP 831
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 898 PXXPPPPXPPPPGXXPP 948
           P  PP P PPP     P
Sbjct: 95  PTTPPTPSPPPEERLTP 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.312    0.154    0.551 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,866
Number of Sequences: 336
Number of extensions: 4994
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26996013
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)